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List of works by Tanya Z Berardini

A MOD(ern) perspective on literature curation.

scientific article

Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts

scientific article

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

article

Annotation of gene product function from high-throughput studies using the Gene Ontology

article

Arabidopsis database and stock resources

scientific article published on January 2014

Assessment of community-submitted ontology annotations from a novel database-journal partnership ⬇️

scientific article published on January 1, 2012

Biocurators and biocuration: surveying the 21st century challenges

scientific article

Building an efficient curation workflow for the Arabidopsis literature corpus.

scientific article

Cross-product extensions of the Gene Ontology

scientific article

Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)

scientific article published on 28 October 2021

Cyclophilin 40 is required for microRNA activity in Arabidopsis

scholarly article

Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology

scientific article

Functional annotation of the Arabidopsis genome using controlled vocabularies

scientific article (publication date: June 2004)

Gene Ontology Consortium: going forward

scientific article (publication date: 2015)

Gene Ontology annotations and resources

scientific article

HASTY, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis.

scientific article

Identification of Neuronal Isozyme Specific Residues by Comparison of Goldfish Aldolase C to Other Aldolases ⬇️

scientific article published on August 1, 1997

Improving Interpretation of Cardiac Phenotypes and Enhancing Discovery With Expanded Knowledge in the Gene Ontology

scientific article published in February 2018

Methods for gene ontology annotation.

scientific article published on January 2007

Modeling biochemical pathways in the gene ontology

scientific article published on September 2016

PhyloGenes: An online phylogenetics and functional genomics resource for plant gene function inference

scientific article published on 30 December 2020

PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature.

scientific article published on March 2006

RNAcentral: a comprehensive database of non-coding RNA sequences

scientific article (publication date: 4 January 2017)

RNAcentral: a hub of information for non-coding RNA sequences

scientific article published on 5 November 2018

Recurated protein interaction datasets

article

Regulation of vegetative phase change in Arabidopsis thaliana by cyclophilin 40.

scientific article

Representing ontogeny through ontology: a developmental biologist's guide to the gene ontology

scientific article

Spatial clustering of isozyme-specific residues reveals unlikely determinants of isozyme specificity in fructose-1,6-bisphosphate aldolase

scientific article (publication date: 9 May 2003)

Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model

scientific article

TAIR: a resource for integrated Arabidopsis data

scientific article published on 3 October 2002

TermGenie - a web-application for pattern-based ontology class generation

scientific article published on 11 December 2014

Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR

scientific article (publication date: 2012)

The Arabidopsis Information Resource (TAIR): gene structure and function annotation.

scientific article

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools ⬇️

scientific article published on December 2, 2011

The Arabidopsis information resource: Making and mining the "gold standard" annotated reference plant genome.

scientific article

The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments

scientific article (publication date: 7 October 2013)

The Gene Ontology (GO) database and informatics resource

scientific article (publication date: 2004)

The Gene Ontology knowledgebase in 2023

scientific article published in 2023

The plant ontology as a tool for comparative plant anatomy and genomic analyses

scientific article published on 5 December 2012

The representation of heart development in the gene ontology

scientific article published on 17 March 2011

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