List of works - Arcady Mushegian

2DE identification of proteins exhibiting turnover and phosphorylation dynamics during sea urchin egg activation

scientific article published on 13 November 2007

50 years of the International Committee on Taxonomy of Viruses: progress and prospects.

scientific article

A complex oscillating network of signaling genes underlies the mouse segmentation clock

scientific article published on 9 November 2006

A family of GFP-like proteins with different spectral properties in lancelet Branchiostoma floridae

scientific article

A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches

scientific article (publication date: 15 June 2010)

A mammalian chromatin remodeling complex with similarities to the yeast INO80 complex

scientific article

A metazoan ATAC acetyltransferase subunit that regulates mitogen-activated protein kinase signaling is related to an ancient molybdopterin synthase component

scientific article

A novel histone fold domain-containing protein that replaces TAF6 in Drosophila SAGA is required for SAGA-dependent gene expression

scientific article

A polynomial-time algorithm computing lower and upper bounds of the rooted subtree prune and regraft distance

scientific article published on 18 December 2010

A topological algorithm for identification of structural domains of proteins.

scientific article

Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018)

scientific article published on 01 March 2019

An ancient evolutionary connection between Ribonuclease A and EndoU families

scientific article published on 13 April 2020

Binomial nomenclature for virus species: a consultation

scientific article published on 01 February 2020

Chalcone isomerase family and fold: no longer unique to plants

scientific article published on 10 January 2004

Changes in the composition of the RNA virome mark evolutionary transitions in green plants

scientific article

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017).

scientific article published on 22 April 2017

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).

scientific article

Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019)

scientific article published on 01 September 2019

Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020)

scientific article published on 20 August 2020

Chordopoxvirus protein F12 implicated in enveloped virion morphogenesis is an inactivated DNA polymerase

scientific article

Comparative genomics of ethanolamine utilization

scientific article published on 25 September 2009

Comparison of pattern detection methods in microarray time series of the segmentation clock

scientific article

Computational methods for Gene Orthology inference

scientific article

Conserved Phosphoprotein Interaction Motif Is Functionally Interchangeable between Ataxin-7 and Arrestins†

scientific article published on 01 June 2000

Conserved transactivation domain shared by interferon regulatory factors and Smad morphogens.

scientific article published on May 1999

Correction to: Binomial nomenclature for virus species: a consultation

scientific article published on 17 February 2020

Detecting periodic patterns in unevenly spaced gene expression time series using Lomb-Scargle periodograms

scientific article published on 22 November 2005

Detection of biochemical pathways by probabilistic matching of phyletic vectors

scientific article

Displacements of prohead protease genes in the late operons of double-stranded-DNA bacteriophages

scientific article

Distinct circular single-stranded DNA viruses exist in different soil types

scientific article published on 3 April 2015

Distribution of words with a predefined range of mismatches to a DNA probe in bacterial genomes

scientific article published in January 2004

Evolution of plant virus movement proteins from the 30K superfamily and of their homologs integrated in plant genomes

scientific article published on 7 January 2015

Evolutionarily conserved orthologous families in phages are relatively rare in their prokaryotic hosts

scientific article

Evolutionary history of bacteriophages with double-stranded DNA genomes

scientific article

Evolutionary perspective on innate immune recognition

scientific article

Evolutionary plasticity of segmentation clock networks.

scientific article

Functional Specialization and Evolution of Leader Proteinases in the Family Closteroviridae ⬇️

scientific article published on December 1, 2001

G protein-coupled receptor kinases: more than just kinases and not only for GPCRs

scientific article published on 26 August 2011

Gene content of LUCA, the last universal common ancestor

scientific article

Genome comparison and proteomic characterization of Thermus thermophilus bacteriophages P23-45 and P74-26: siphoviruses with triplex-forming sequences and the longest known tails

scientific article published on 15 February 2008

Genome sequence analysis indicates that the model eukaryote Nematostella vectensis harbors bacterial consorts

scientific article published on 30 August 2013

Genome sequence and gene expression of Bacillus anthracis bacteriophage Fah.

scientific article

Genomic and proteomic analysis of phiEco32, a novel Escherichia coli bacteriophage

scientific article published on 11 January 2008

Guidance for creating individual and batch latinized binomial virus species names

scientific article published in 2022

Human family with sequence similarity 60 member A (FAM60A) protein: a new subunit of the Sin3 deacetylase complex

scientific article

Identification and Characterization of a Schizosaccharomyces pombe RNA Polymerase II Elongation Factor with Similarity to the Metazoan Transcription Factor ELL.

scientific article

Identification of Elongin C and Skp1 sequences that determine Cullin selection

scientific article

Incomplete penetrance and phenotypic variability characterize Gdf6-attributable oculo-skeletal phenotypes

scientific article

Intermediary metabolism in sea urchin: The first inferences from the genome sequence

article published in 2006

Large-scale isolation of candidate virulence genes of Pseudomonas aeruginosa by in vivo selection.

scientific article published on September 1996

Measuring gene expression divergence: the distance to keep

scientific article

Measuring similarity between gene interaction profiles

scientific article published on 22 August 2019

Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep

scientific article

Michael Adams: new life member of the International Committee on Taxonomy of Viruses (ICTV)

scientific article published on 31 May 2019

Minimal genome encoding proteins with constrained amino acid repertoire

scientific article published on 19 July 2013

Modeling protein folding in vivo.

scientific article published on 6 July 2018

Models of gene gain and gene loss for probabilistic reconstruction of gene content in the last universal common ancestor of life

scientific article published on 19 December 2013

Molecular dissection of arginyltransferases guided by similarity to bacterial peptidoglycan synthases

scientific article

Natural history of S-adenosylmethionine-binding proteins

scientific article

New dimensions of the virus world discovered through metagenomics

scientific article

NleB, a Bacterial Effector with Glycosyltransferase Activity, Targets GAPDH Function to Inhibit NF-κB Activation

scholarly article published by Arcady Mushegian in 2013

NleB, a bacterial effector with glycosyltransferase activity, targets GAPDH function to inhibit NF-κB activation

scientific article published on 16 January 2013

Orthologous gene clusters and taxon signature genes for viruses of prokaryotes

scientific article

Prokaryotic genes in eukaryotic genome sequences: when to infer horizontal gene transfer and when to suspect an actual microbe

scientific article published on 28 April 2015

Protein content of minimal and ancestral ribosome

scientific article published on 25 July 2005

Protein repertoire of double-stranded DNA bacteriophages

scientific article

Prp8, the pivotal protein of the spliceosomal catalytic center, evolved from a retroelement-encoded reverse transcriptase

scientific article

RDH10 is essential for synthesis of embryonic retinoic acid and is required for limb, craniofacial, and organ development

scientific journal article

RNAs That Behave Like Prions

scientific article published on 01 July 2020

Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022)

scientific article published in 2022

Rotational restriction of nascent peptides as an essential element of co-translational protein folding: possible molecular players and structural consequences.

scientific article

SHORT INTEGUMENTS1/SUSPENSOR1/CARPEL FACTORY, a Dicer homolog, is a maternal effect gene required for embryo development in Arabidopsis

scientific article published in October 2002

Sequence analysis of malacoherpesvirus proteins: Pan-herpesvirus capsid module and replication enzymes with an ancient connection to "Megavirales".

scientific article published on 21 October 2017

Sequence-function analysis of the Sendai virus L protein domain VI.

scientific article published on 6 July 2010

Similarity searches in genome-wide numerical data sets

scientific article

The ATAC acetyltransferase complex coordinates MAP kinases to regulate JNK target genes

scientific article published on September 2010

The SPO1 gene product required for meiosis in yeast has a high similarity to phospholipase B enzymes.

scientific article

The Sad1-UNC-84 homology domain in Mps3 interacts with Mps2 to connect the spindle pole body with the nuclear envelope

scientific article

The alpha subunit of E. coli RNA polymerase activates RNA binding by NusA

scientific article

The choice of optimal distance measure in genome-wide datasets

scientific article published in November 2005

The genome of the sea urchin Strongylocentrotus purpuratus

scientific article

The origin and evolution of G protein-coupled receptor kinases

scientific article published on 19 March 2012

The proposed plant connexin is a protein kinase-like protein

scientific article

The putative movement domain encoded by nepovirus RNA-2 is conserved in all sequenced nepoviruses

scientific article published on 01 January 1994

The role of the backbone torsion in protein folding

scientific article published on December 2016

The sea urchin kinome: a first look

scientific article

Thermus thermophilus bacteriophage phiYS40 genome and proteomic characterization of virions

scientific article published on 6 September 2006

Three monophyletic superfamilies account for the majority of the known glycosyltransferases

scientific article

List of works by Arcady Mushegian

2DE identification of proteins exhibiting turnover and phosphorylation dynamics during sea urchin egg activation

50 years of the International Committee on Taxonomy of Viruses: progress and prospects.

A complex oscillating network of signaling genes underlies the mouse segmentation clock

A family of GFP-like proteins with different spectral properties in lancelet Branchiostoma floridae

A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches

A mammalian chromatin remodeling complex with similarities to the yeast INO80 complex

A metazoan ATAC acetyltransferase subunit that regulates mitogen-activated protein kinase signaling is related to an ancient molybdopterin synthase component

A novel histone fold domain-containing protein that replaces TAF6 in Drosophila SAGA is required for SAGA-dependent gene expression

A polynomial-time algorithm computing lower and upper bounds of the rooted subtree prune and regraft distance

A topological algorithm for identification of structural domains of proteins.

Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018)

An ancient evolutionary connection between Ribonuclease A and EndoU families

Binomial nomenclature for virus species: a consultation

Chalcone isomerase family and fold: no longer unique to plants

Changes in the composition of the RNA virome mark evolutionary transitions in green plants

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017).

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).

Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019)

Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020)

Chordopoxvirus protein F12 implicated in enveloped virion morphogenesis is an inactivated DNA polymerase

Comparative genomics of ethanolamine utilization

Comparison of pattern detection methods in microarray time series of the segmentation clock

Computational methods for Gene Orthology inference

Conserved Phosphoprotein Interaction Motif Is Functionally Interchangeable between Ataxin-7 and Arrestins†

Conserved transactivation domain shared by interferon regulatory factors and Smad morphogens.

Correction to: Binomial nomenclature for virus species: a consultation

Detecting periodic patterns in unevenly spaced gene expression time series using Lomb-Scargle periodograms

Detection of biochemical pathways by probabilistic matching of phyletic vectors

Displacements of prohead protease genes in the late operons of double-stranded-DNA bacteriophages

Distinct circular single-stranded DNA viruses exist in different soil types

Distribution of words with a predefined range of mismatches to a DNA probe in bacterial genomes

Evolution of plant virus movement proteins from the 30K superfamily and of their homologs integrated in plant genomes

Evolutionarily conserved orthologous families in phages are relatively rare in their prokaryotic hosts

Evolutionary history of bacteriophages with double-stranded DNA genomes

Evolutionary perspective on innate immune recognition

Evolutionary plasticity of segmentation clock networks.

Functional Specialization and Evolution of Leader Proteinases in the Family Closteroviridae ⬇️

G protein-coupled receptor kinases: more than just kinases and not only for GPCRs

Gene content of LUCA, the last universal common ancestor

Genome comparison and proteomic characterization of Thermus thermophilus bacteriophages P23-45 and P74-26: siphoviruses with triplex-forming sequences and the longest known tails

Genome sequence analysis indicates that the model eukaryote Nematostella vectensis harbors bacterial consorts

Genome sequence and gene expression of Bacillus anthracis bacteriophage Fah.

Genomic and proteomic analysis of phiEco32, a novel Escherichia coli bacteriophage

Guidance for creating individual and batch latinized binomial virus species names

Human family with sequence similarity 60 member A (FAM60A) protein: a new subunit of the Sin3 deacetylase complex

Identification and Characterization of a Schizosaccharomyces pombe RNA Polymerase II Elongation Factor with Similarity to the Metazoan Transcription Factor ELL.

Identification of Elongin C and Skp1 sequences that determine Cullin selection

Incomplete penetrance and phenotypic variability characterize Gdf6-attributable oculo-skeletal phenotypes

Intermediary metabolism in sea urchin: The first inferences from the genome sequence

Large-scale isolation of candidate virulence genes of Pseudomonas aeruginosa by in vivo selection.

Measuring gene expression divergence: the distance to keep

Measuring similarity between gene interaction profiles

Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep

Michael Adams: new life member of the International Committee on Taxonomy of Viruses (ICTV)

Minimal genome encoding proteins with constrained amino acid repertoire

Modeling protein folding in vivo.

Models of gene gain and gene loss for probabilistic reconstruction of gene content in the last universal common ancestor of life

Molecular dissection of arginyltransferases guided by similarity to bacterial peptidoglycan synthases

Natural history of S-adenosylmethionine-binding proteins

New dimensions of the virus world discovered through metagenomics

NleB, a Bacterial Effector with Glycosyltransferase Activity, Targets GAPDH Function to Inhibit NF-κB Activation

NleB, a bacterial effector with glycosyltransferase activity, targets GAPDH function to inhibit NF-κB activation

Orthologous gene clusters and taxon signature genes for viruses of prokaryotes

Prokaryotic genes in eukaryotic genome sequences: when to infer horizontal gene transfer and when to suspect an actual microbe

Protein content of minimal and ancestral ribosome

Protein repertoire of double-stranded DNA bacteriophages

Prp8, the pivotal protein of the spliceosomal catalytic center, evolved from a retroelement-encoded reverse transcriptase

RDH10 is essential for synthesis of embryonic retinoic acid and is required for limb, craniofacial, and organ development

RNAs That Behave Like Prions

Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022)

Rotational restriction of nascent peptides as an essential element of co-translational protein folding: possible molecular players and structural consequences.

SHORT INTEGUMENTS1/SUSPENSOR1/CARPEL FACTORY, a Dicer homolog, is a maternal effect gene required for embryo development in Arabidopsis

Sequence analysis of malacoherpesvirus proteins: Pan-herpesvirus capsid module and replication enzymes with an ancient connection to "Megavirales".

Sequence-function analysis of the Sendai virus L protein domain VI.

Similarity searches in genome-wide numerical data sets

The ATAC acetyltransferase complex coordinates MAP kinases to regulate JNK target genes

The SPO1 gene product required for meiosis in yeast has a high similarity to phospholipase B enzymes.

The Sad1-UNC-84 homology domain in Mps3 interacts with Mps2 to connect the spindle pole body with the nuclear envelope

The alpha subunit of E. coli RNA polymerase activates RNA binding by NusA