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List of works by Stefano Toppo

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Full Genome Sequence-Based Comparative Study of Wild-Type and Vaccine Strains of Infectious Laryngotracheitis Virus from Italy

scientific article published on 18 February 2016
Sox10 contributes to the balance of fate choice in dorsal root ganglion progenitors

scientific article
A two-step strategy for constructing specifically self-subtracted cDNA libraries

scientific article
Loss of cardiac Wnt/β-catenin signalling in Desmoplakin-deficient AC8 zebrafish models is rescuable by genetic and pharmacological intervention.

scientific article published on 7 March 2018
Studying interactions by molecular dynamics simulations at high concentration

scientific article published on 22 February 2012
Understanding mammalian glutathione peroxidase 7 in the light of its homologs.

scientific article published on 25 February 2015
Identification of novel X-linked gain-of-function RPGR-ORF15 mutation in Italian family with retinitis pigmentosa and pathologic myopia

scientific article published on 20 December 2016
Large-scale prediction of protein structure and function from sequence.

scientific article
Suppression of COVID-19 outbreak in the municipality of Vo, Italy

scientific article published on 18 April 2020
Redox status in a model of cancer stem cells.

scientific article published on 13 September 2016
Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene

article
Identification by MS/MS of disulfides produced by a functional redox transition

scientific article published on January 2010
TRAIT (TRAnscript Integrated Table): a knowledgebase of human skeletal muscle transcripts.

scientific article published on March 2003
Glutathione peroxidase 8 is transcriptionally regulated by HIFα and modulates growth factor signaling in HeLa cells.

scientific article published on January 2015
Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications

scientific article
Inactivation of the glutathione peroxidase GPx4 by the ferroptosis-inducing molecule RSL3 requires the adaptor protein 14-3-3ε

scientific article published on 20 October 2019
Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms.

scientific article
G-quadruplex forming sequences in the genome of all known human viruses: a comprehensive guide

scientific article published on 11 June 2018
Zebrafish spata2 is expressed at early developmental stages.

scientific article published on January 2007
Differential liquid phase proteomic analysis of the effect of selenium supplementation in LNCaP cells.

scientific article
Align: a C++ class library and web server for rapid sequence alignment prototyping.

scientific article published in September 2006
keeSeek: searching distant non-existing words in genomes for PCR-based applications.

scientific article published on 27 May 2014
Eliciting the Functional Taxonomy from protein annotations and taxa

scientific article published on 18 August 2016
NeSSie: a tool for the identification of approximate DNA sequence symmetries.

scientific article published on 7 March 2018
Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs

scientific article
Glutathione Peroxidase 4

scientific article published in 2016
MPA: a multiple peak alignment algorithm to perform multiple comparisons of liquid-phase proteomic profiles

scientific article published in January 2008
Draft genome sequences of two Neisseria meningitidis serogroup C clinical isolates

scientific article published on 30 July 2010
Mass Spectrometry Data Analysis in the Proteomics Era

scientific article published in January 2007
QPARSE: searching for long-looped or multimeric G-quadruplexes potentially distinctive and druggable

scientific article published on 01 January 2020
Rapid SARS-CoV-2 Intra-Host and Within-Household Emergence of Novel Haplotypes

scientific article published in 2022
Matching up Phosphosites to Kinases: A Survey of Available Predictive Programs

scientific article published in June 2010
Evolutionary Study of the Crassphage Virus at Gene Level

scientific article published on 17 September 2020
Neutralising reactivity against SARS-CoV-2 Delta and Omicron variants by vaccination and infection history

scientific article published in 2022
Copper/Zinc Superoxide Dismutase from the Crocodile Icefish Chionodraco hamatus: Antioxidant Defense at Constant Sub-Zero Temperature

scientific article published on 17 April 2020
Glutathione Peroxidase-4

scientific article published in 2011
Lack of glutathione peroxidase-8 in the ER impacts on lipid composition of HeLa cells microsomal membranes

scientific article published on 16 December 2019
Human Virus Genomes Are Enriched in Conserved Adenine/Thymine/Uracil Multiple Tracts That Pause Polymerase Progression

scientific article published in 2022
Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters

scientific article published on 01 February 2022

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