List of works - Saeed Shoaie

A widely used sampling device in colorectal cancer screening programmes allows for large-scale microbiome studies

scientific article published on 21 September 2018

Abundance and diversity of resistomes differ between healthy human oral cavities and gut

scientific article published on 04 February 2020

Candidalysin drives epithelial signaling, neutrophil recruitment, and immunopathology at the vaginal mucosa.

scientific article published on 6 November 2017

Challenges in modeling the human gut microbiome

scientific article published on 01 August 2018

Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients

scientific article published on 01 October 2021

Dynamic13C-labeling experiments prove important differences in protein turnover rate between twoSaccharomyces cerevisiaestrains

scientific article published on 20 July 2012

Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction

scientific article

Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials

scientific article

Identifying anti-growth factors for human cancer cell lines through genome-scale metabolic modeling.

scientific article

MEMOTE for standardized genome-scale metabolic model testing

scientific article published on 01 March 2020

Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

Multiomics Analysis Reveals the Impact of Microbiota on Host Metabolism in Hepatic Steatosis

scientific article published on 07 February 2022

Postmortem Cortical Transcriptomics of Lewy Body Dementia Reveal Mitochondrial Dysfunction and Lack of Neuroinflammation

scientific article published on 24 June 2019

Prediction of drug candidates for clear cell renal cell carcinoma using a systems biology-based drug repositioning approach

scientific article published on 25 March 2022

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing

scientific article published on 01 April 2020

Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome.

scientific article

Simplified Intestinal Microbiota to Study Microbe-Diet-Host Interactions in a Mouse Model

article by Petia Kovatcheva-Datchary et al published 26 March 2019 in Cell Reports

The Intestine Harbors Functionally Distinct Homeostatic Tissue-Resident and Inflammatory Th17 Cells

scientific article published on 19 June 2019

The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum

scientific article

Understanding the Representative Gut Microbiota Dysbiosis in Metformin-Treated Type 2 Diabetes Patients Using Genome-Scale Metabolic Modeling.

scientific article published on 25 June 2018

Understanding the interactions between bacteria in the human gut through metabolic modeling

scientific article

List of works by Saeed Shoaie

A widely used sampling device in colorectal cancer screening programmes allows for large-scale microbiome studies

Abundance and diversity of resistomes differ between healthy human oral cavities and gut

Candidalysin drives epithelial signaling, neutrophil recruitment, and immunopathology at the vaginal mucosa.

Challenges in modeling the human gut microbiome

Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients

Dynamic13C-labeling experiments prove important differences in protein turnover rate between twoSaccharomyces cerevisiaestrains

Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction

Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials

Identifying anti-growth factors for human cancer cell lines through genome-scale metabolic modeling.

MEMOTE for standardized genome-scale metabolic model testing

Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

Multiomics Analysis Reveals the Impact of Microbiota on Host Metabolism in Hepatic Steatosis

Postmortem Cortical Transcriptomics of Lewy Body Dementia Reveal Mitochondrial Dysfunction and Lack of Neuroinflammation

Prediction of drug candidates for clear cell renal cell carcinoma using a systems biology-based drug repositioning approach

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing

Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome.

Simplified Intestinal Microbiota to Study Microbe-Diet-Host Interactions in a Mouse Model

The Intestine Harbors Functionally Distinct Homeostatic Tissue-Resident and Inflammatory Th17 Cells

The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum

Understanding the Representative Gut Microbiota Dysbiosis in Metformin-Treated Type 2 Diabetes Patients Using Genome-Scale Metabolic Modeling.

Understanding the interactions between bacteria in the human gut through metabolic modeling