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List of works by Wolfram Liebermeister

A comprehensive library of fluorescent transcriptional reporters for Escherichia coli

scientific article

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

scientific article

A note on the kinetics of enzyme action: a decomposition that highlights thermodynamic effects

scientific article published on 23 July 2013

A quantitative study of the Hog1 MAPK response to fluctuating osmotic stress in Saccharomyces cerevisiae

scientific article

A theory of optimal differential gene expression.

scientific article published in August 2004

Annotation and merging of SBML models with semanticSBML

scientific article

Automated generation of bacterial resource allocation models

scientific article published on 09 June 2019

Automatically generated model of a metabolic network.

scientific article published in January 2007

Biochemical network models simplified by balanced truncation

scientific article published in August 2005

Biochemical networks with uncertain parameters.

scientific article published in September 2005

Bringing metabolic networks to life: convenience rate law and thermodynamic constraints

scientific article published on 15 December 2006

Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data

scientific article

Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs

scientific article published on 03 April 2020

Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis

scientific article

Does mapping reveal correlation between gene expression and protein–protein interaction?

article

Exploring the effect of variable enzyme concentrations in a kinetic model of yeast glycolysis

scientific article published in January 2008

Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism

scientific article published in March 2012

Glycolytic strategy as a tradeoff between energy yield and protein cost

scientific article published on 29 April 2013

Inferring dynamic properties of biochemical reaction networks from structural knowledge

scientific article published in January 2004

Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model

scientific article published on June 2010

Integration of enzyme kinetic data from various sources.

scientific article

Mathematical modeling of intracellular signaling pathways ⬇️

scientific article

Metabolic enzyme cost explains variable trade-offs between microbial growth rate and yield

scientific article published on 16 February 2018

Metabolic enzyme cost explains variable trade-offs between microbial growth rate and yield

Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementation

scientific article

Nested uncertainties in biochemical models

scientific article published on January 2009

Notions of similarity for computational biology models

Notions of similarity for systems biology models

scientific article published on 14 October 2016

Notions of similarity for systems biology models.

scientific article published in September 2017

Parameter balancing in kinetic models of cell metabolism

scientific article

Pathway thermodynamics highlights kinetic obstacles in central metabolism

scientific article

Predicting physiological concentrations of metabolites from their molecular structure.

scientific article published in December 2005

Prediction of enzyme kinetic parameters based on statistical learning.

scientific article published in January 2006

Propagating semantic information in biochemical network models

scientific article

Response to temporal parameter fluctuations in biochemical networks.

scientific article published in June 2005

Retrieval, alignment, and clustering of computational models based on semantic annotations

scientific article published on 19 July 2011

SBML Level 3 Package Proposal: Annotation

SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3

article

SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3.

scientific article

SBML Level 3: an extensible format for the exchange and reuse of biological models

scientific article published on 01 August 2020

SBMLmerge, a system for combining biochemical network models.

scientific article published on January 2006

SBtab: a flexible table format for data exchange in systems biology

scientific article

Spanning high-dimensional expression space using ribosome-binding site combinatorics

scientific article published on 6 March 2013

Steady-state metabolite concentrations reflect a balance between maximizing enzyme efficiency and minimizing total metabolite load

scientific article

Structural Thermokinetic Modelling

scientific article published in 2022

Sustainable model building the role of standards and biological semantics

scientific article published on January 2011

Systematic construction of kinetic models from genome-scale metabolic networks

scientific article

Systems biology standards—the community speaks

The Protein Cost of Metabolic Fluxes: Prediction from Enzymatic Rate Laws and Cost Minimization ⬇️

scientific article

The moderately efficient enzyme: evolutionary and physicochemical trends shaping enzyme parameters

scientific article

Toward Community Standards and Software for Whole-Cell Modeling

scientific article

Visual account of protein investment in cellular functions

scientific article

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