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List of works by Halit Ongen

A complete tool set for molecular QTL discovery and analysis

scientific article

Alternative Splicing QTLs in European and African Populations

scientific article

Cell-type, allelic, and genetic signatures in the human pancreatic beta cell transcriptome

scientific article published on 28 May 2013

Characterising cis-regulatory variation in the transcriptome of histologically normal and tumour-derived pancreatic tissues

scientific article published on 20 June 2017

Comprehensive evaluation of coding region point mutations in microsatellite‐unstable colorectal cancer

scientific article published on 14 August 2018

Contribution of allelic imbalance to colorectal cancer

scientific article published in Nature Communications

Correction: Passive and active DNA methylation and the interplay with genetic variation in gene regulation

scientific article published on 14 June 2013

Corrigendum: Integrative genomic analysis implicates limited peripheral adipose storage capacity in the pathogenesis of human insulin resistance

scientific article

ERRATUM: Meta-analysis of Dense Genecentric Association Studies Reveals Common and Uncommon Variants Associated with Height

article by Matthew B. Lanktree et al published June 2012 in American Journal of Human Genetics

Estimating the causal tissues for complex traits and diseases

scientific article

Fast and efficient QTL mapper for thousands of molecular phenotypes.

scientific article published on 26 December 2015

Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk

scientific article published on 6 October 2011

Genome-wide association analyses identify 18 new loci associated with serum urate concentrations

scientific article published in February 2013

Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes

scientific article

Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure

scientific article

Integrative genomic analysis implicates limited peripheral adipose storage capacity in the pathogenesis of human insulin resistance.

scientific article

Meta-analysis of Dense Genecentric Association Studies Reveals Common and Uncommon Variants Associated with Height

scientific article

MethCORR modelling of methylomes from formalin-fixed paraffin-embedded tissue enables characterization and prognostication of colorectal cancer

scientific article published on 24 April 2020

Molecular-Subtype-Specific Biomarkers Improve Prediction of Prognosis in Colorectal Cancer

scientific article published on May 2017

Non-CpG island promoter hypomethylation and miR-149 regulate the expression of SRPX2 in colorectal cancer

scientific article published on 21 November 2012

Passive and active DNA methylation and the interplay with genetic variation in gene regulation

scientific article published on 4 June 2013

Publisher Correction: MethCORR modelling of methylomes from formalin-fixed paraffin-embedded tissue enables characterization and prognostication of colorectal cancer

scientific article published on 03 June 2020

Putative cis-regulatory drivers in colorectal cancer

scientific article published on 23 July 2014

SNHG16 is regulated by the Wnt pathway in colorectal cancer and affects genes involved in lipid metabolism

scientific article published on 26 June 2016

Susceptibility to coronary artery disease and diabetes is encoded by distinct, tightly linked SNPs in the ANRIL locus on chromosome 9p.

scientific article

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases

scientific article (publication date: 4 January 2016)

The non-coding variant rs1800734 enhances DCLK3 expression through long-range interaction and promotes colorectal cancer progression

scientific article published on 14 February 2017

Tissue-specific effects of genetic and epigenetic variation on gene regulation and splicing

scientific article published on 29 January 2015

Transcriptome and genome sequencing uncovers functional variation in humans

scientific article

Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variation

article

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