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List of works by Peter Midford

500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton

scientific article (publication date: June 2012)

A Comparison of Microbial Genome Web Portals

scientific article published in 2019

Emerging semantics to link phenotype and environment

scientific article

Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature

scientific article (publication date: 20 May 2010)

Exploring power and parameter estimation of the BiSSE method for analyzing species diversification ⬇️

scientific article (publication date: 11 February 2013)

Finding our way through phenotypes

scientific article

Linking of digital images to phylogenetic data matrices using a morphological ontology

scientific article

NeXML: rich, extensible, and verifiable representation of comparative data and metadata

scientific article (publication date: July 2012)

Ontologies for behavior

scientific article published on 29 July 2004

Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology

scientific article published on 08 December 2019

Patterns in root traits of woody species hosting arbuscular and ectomycorrhizas: implications for the evolution of belowground strategies

scientific article

Phenex: ontological annotation of phenotypic diversity

scientific article (publication date: 5 May 2010)

Phenoscape: Ontologies for Large Multi-species Phenotype Datasets

Phenoscape: Ontologies for Large Multi-species Phenotype Datasets

scientific article published on 14 August 2009

Phylontal: Using Phylogenies to Align Phenotype Ontologies

scientific article published in 2010

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient

scientific article (publication date: 13 May 2013)

Robots aren't the only physical models

scientific article published on 01 December 2001

Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies

scientific article

Social learning of a novel foraging patch in families of free-living Florida scrub-jays

scientific article published in June 2000

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

scientific article

Taxonomic weighting improves the accuracy of a gap-filling algorithm for metabolic models

scientific article published on 01 March 2020

The BioCyc collection of microbial genomes and metabolic pathways

scientific article published on 17 August 2017

The EcoCyc Database

scientific article published on 01 November 2018

The MetaCyc database of metabolic pathways and enzymes

scientific article

The MetaCyc database of metabolic pathways and enzymes - a 2019 update

scientific article published on 01 January 2020

The Teleost Taxonomy Ontology

scientific article published on 6 July 2010

The teleost anatomy ontology: anatomical representation for the genomics age

scientific article

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes

scientific article

Using Pathway Covering to Explore Connections among Metabolites.

scientific article

Within-species variation and measurement error in phylogenetic comparative methods

scientific article published in April 2007

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