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List of works by Alexander D Diehl

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A promoter-level mammalian expression atlas

scientific article
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

scientific article
Gateways to the FANTOM5 promoter level mammalian expression atlas

scientific article
Logical development of the cell ontology

scientific article
Protein Ontology: a controlled structured network of protein entities

scientific article
CLO: The cell line ontology

scientific article
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

scientific article
A unified anatomy ontology of the vertebrate skeletal system

scientific article (publication date: 2012)
Ontology development for biological systems: immunology

scientific article
Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis

scientific article
An improved ontological representation of dendritic cells as a paradigm for all cell types

scientific article
Hematopoietic cell types: prototype for a revised cell ontology

scientific article
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities

scientific article
How the gene ontology evolves

scientific article (publication date: 5 August 2011)
Access to immunology through the Gene Ontology

scientific article published on October 2008
Muscle Research and Gene Ontology: New standards for improved data integration

scientific article
flowCL: ontology-based cell population labelling in flow cytometry

scientific article
Cell type discovery using single-cell transcriptomics: implications for ontological representation.

scientific article published on 24 March 2018
The neurological disease ontology

scientific article
Ontology based molecular signatures for immune cell types via gene expression analysis

scientific article
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

scientific article published on 13 October 2021
Representing vision and blindness

scientific article published on 30 March 2016
VO: Vaccine Ontology

Reporting and connecting cell type names and gating definitions through ontologies

scientific article published on 25 April 2019
VO: Vaccine Ontology

Toward a minimal information reporting standard about new cell types

preprint
OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.

scientific article published on 25 April 2019
Cells in experimental life sciences - challenges and solution to the rapid evolution of knowledge

scientific article
VO: Vaccine Ontology

Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project

scientific article published on 16 September 2020
An ontology for representing hematologic malignancies: the cancer cell ontology.

scientific article published on 25 April 2019
VO: The Vaccine Ontology

The Gene Ontology knowledgebase in 2023

scientific article published in 2023
Modularization for the Cell Ontology

scientific article published on 12 December 2011
VO: Vaccine Ontology

Ontological Realism for the Research Domain Criteria for Mental Disorders

scientific article published on January 2017
Literature Triage and Indexing in the Mouse Genome Informatics (MGI) Group

Cells in ExperimentaL Life Sciences (CELLS-2018): capturing the knowledge of normal and diseased cells with ontologies.

scientific article published on 25 April 2019
Modularization for the Cell Ontology

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