Search filters

List of works by Zasha Weinberg

A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes

scientific article

A eubacterial riboswitch class that senses the coenzyme tetrahydrofolate

scientific article

A glycine-dependent riboswitch that uses cooperative binding to control gene expression

scientific article

A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism

scientific article

A widespread self-cleaving ribozyme class is revealed by bioinformatics.

scientific article

Accurate Annotation of Non-coding Rnas in Practical Time ⬇️

doctoral thesis by Zasha Weinberg, Computer Science & Engineering, University of Washington, 2005

Bacterial riboswitches cooperatively bind Ni(2+) or Co(2+) ions and control expression of heavy metal transporters.

scientific article

Bioinformatic analysis of riboswitch structures uncovers variant classes with altered ligand specificity.

scientific article published on 6 March 2017

Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

scientific article

Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions.

scientific article

Discovery of 20 novel ribosomal leader candidates in bacteria and archaea

scientific article published on 24 May 2020

Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis.

scientific article

Finding non-coding RNAs through genome-scale clustering.

scientific article

Fluoride resistance and transport by riboswitch-controlled CLC antiporters ⬇️

scientific article published on September 4, 2012

Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'

scientific article

Identification of hammerhead ribozymes in all domains of life reveals novel structural variations

scientific article

Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote

scientific article

Meeting report of the RNA Ontology Consortium January 8-9, 2011.

scientific article

New classes of self-cleaving ribozymes revealed by comparative genomics analysis

scientific article (publication date: August 2015)

Numerous small hammerhead ribozyme variants associated with Penelope-like retrotransposons cleave RNA as dimers

scientific article published on 18 November 2016

R2R--software to speed the depiction of aesthetic consensus RNA secondary structures

scientific article

RNIE: genome-wide prediction of bacterial intrinsic terminators

scientific article published on 7 April 2011

Rfam 14: expanded coverage of metagenomic, viral and microRNA families

scientific article published on 19 November 2020

Riboswitches in eubacteria sense the second messenger c-di-AMP

scientific article

SAM-VI RNAs Selectively Bind S-adenosylmethionine and Exhibit Similarities to SAM-III Riboswitches.

scientific article

Sequence-based heuristics for faster annotation of non-coding RNA families.

scientific article

Small, highly active DNAs that hydrolyze DNA.

scientific article published on 6 June 2013

Structural, functional, and taxonomic diversity of three preQ1 riboswitch classes.

scientific article

The RNA WikiProject: community annotation of RNA families ⬇️

scientific article

The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches

scientific article

The structure of the SAM/SAH-binding riboswitch

scientific article published on 01 March 2019

Widespread genetic switches and toxicity resistance proteins for fluoride

scientific article

Paulina is supported by:

About Paulina

Help