List of works by Julie A. McMurry

A Census of Disease Ontologies

scientific article published on 09 May 2018

A Measure of Open Data: A Metric and Analysis of Reusable Data Practices in Biomedical Data Resources

scholarly article published 16 March 2018

A Simple Standard for Sharing Ontological Mappings (SSSOM)

preprint published on 15 December 2021

A Whole-Genome Analysis Framework for Effective Identification of Pathogenic Regulatory Variants in Mendelian Disease

scientific article published on 25 August 2016

A call to cellular & humoral arms: enlisting cognate T cell help to develop broad-spectrum vaccines against influenza A.

scientific article

A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer

scientific article published on 03 April 2020

Activation of natural regulatory T cells by IgG Fc-derived peptide "Tregitopes"

scientific article

An analysis and metric of reusable data licensing practices for biomedical resources

Analyzing Mycobacterium tuberculosis proteomes for candidate vaccine epitopes.

scientific article published on 25 December 2004

Biolink Model: A Universal Schema for Knowledge Graphs in Clinical, Biomedical, and Translational Science ⬇️

scientific article

Characterizing Long COVID: Deep Phenotype of a Complex Condition

scientific article published on 25 November 2021

Developing an epitope-driven tuberculosis (TB) vaccine

scientific article

Diversity of Francisella tularensis Schu4 antigens recognized by T lymphocytes after natural infections in humans: Identification of candidate epitopes for inclusion in a rationally designed tularemia vaccine

scientific article published on 22 January 2007

Encoding Clinical Data with the Human Phenotype Ontology for Computational Differential Diagnostics

scientific article published on 01 September 2019

Epitope-based vaccination against pneumonic tularemia

scientific article published on 17 July 2009

Epitope-driven TB vaccine development: a streamlined approach using immuno-informatics, ELISpot assays, and HLA transgenic mice.

scientific article published in June 2007

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources

article by Sebastian Köhler et al published 8 January 2019 in Nucleic Acids Research

Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments

scientific article

How many rare diseases are there?

scientific article published on 01 February 2020

Identification of genome-derived vaccine candidates conserved between human and mouse-adapted strains of H. pylori.

scientific article published in May 2008

Identification of immunogenic HLA-B7 "Achilles' heel" epitopes within highly conserved regions of HIV

scientific article published on 26 December 2007

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

scientific article (publication date: 20 March 2017)

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

scientific article

Immuno-informatics: Mining genomes for vaccine components

scientific article

Immunogenicity Screening Usingin Silico Methods: Correlation between T-Cell Epitope Content and Clinical Immunogenicity of Monoclonal Antibodies

article

In silico-accelerated identification of conserved and immunogenic variola/vaccinia T-cell epitopes.

scientific article published on 24 June 2009

Interpretable Clinical Genomics with a Likelihood Ratio Paradigm

scientific article published on 29 July 2020

Interpretable Clinical Genomics with a Likelihood Ratio Paradigm

scholarly article published 28 January 2020

Interpretable prioritization of splice variants in diagnostic next-generation sequencing

scientific article published on 21 July 2021

Mycobacterium tuberculosis

scholarly article published 2009

NSAID use and clinical outcomes in COVID-19 patients: a 38-center retrospective cohort study

scientific article published on 15 May 2022

Navigating the Phenotype Frontier: The Monarch Initiative

scientific article

Navigating the phenotype frontier: The Monarch Initiative

Novel function of complement C3d as an autologous helper T-cell target.

scientific article published on 8 January 2008

Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies

preprint published on 06 July 2022

Plain-language medical vocabulary for precision diagnosis.

scientific article published in April 2018

Prediction of immunogenicity: in silico paradigms, ex vivo and in vivo correlates

scientific article published on 19 September 2008

Progress towards a genome-derived, epitope-driven vaccine for latent TB infection

scientific article published on October 2007

Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery

scientific article published on 01 January 2019

Sharing Clinical and Genomic Data on Cancer - The Need for Global Solutions

scientific article

Sleep and circadian informatics data harmonization: a workshop report from the Sleep Research Society and Sleep Research Network

scientific article published on 15 January 2022

The Human Phenotype Ontology in 2017

scientific article (publication date: 28 November 2016)

The Human Phenotype Ontology in 2021

scientific article published on 02 December 2020

The Human Phenotype Ontology in 2024: phenotypes around the world

scientific article published in 2023

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

scientific article published on 01 January 2020

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

The Monarch Initiative: Insights across species reveal human disease mechanisms

The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species

scientific article

The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences

The case for open science: rare diseases

scientific article published on 12 September 2020

The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research

Tularemia vaccines - an overview

scientific article published on October 2007

Uniform Resolution of Compact Identifiers for Biomedical Data

preprint

Uniform resolution of compact identifiers for biomedical data.

scientific article

Unifying the Identification of Biomedical Entities with the Bioregistry ⬇️

preprint published on 10 July 2022

Unifying the identification of biomedical entities with the Bioregistry ⬇️

scientific article published on 19 November 2022

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