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List of works by Daniel S. Katz

A Component Architecture for High-Performance Scientific Computing

article

A FAIR and AI-ready Higgs boson decay dataset

scientific article published on 14 February 2022

A Fresh Perspective on Developing and Executing DAG-Based Distributed Applications: A Case-Study of SAGA-Based Montage

A Social Content Delivery Network for Scientific Cooperation: Vision, Design, and Architecture

scholarly article published November 2012

A Workflow-Aware Storage System: An Opportunity Study

A multi-disciplinary perspective on emergent and future innovations in peer review

scientific article published on 20 July 2017

A multi-disciplinary perspective on emergent and future innovations in peer review ⬇️

journal article from 'F1000Research' published in 2017

A survey of the state of the practice for research software in the United States

scientific article published on 05 May 2022

A tale of two 'opens': intersections between Free and Open Source Software and Open Scholarship ⬇️

report published in 2020

A tale of two 'opens': intersections between Free and Open Source Software and Open Scholarship ⬇️

journal article published in 2020

AIMES Final Technical Report

AME

An innovative application execution toolkit for multicluster grids

Application Skeleton: Generating Synthetic Applications for Infrastructure Research

Architecture for access to a compute-intensive image mosaic service in the NVO

Automatic Reproduction of Workflows in the Snakemake Workflow Catalog and nf-core Registries

scientific article published on 28 June 2023

BOSS-LDG: A Novel Computational Framework That Brings Together Blue Waters, Open Science Grid, Shifter and the LIGO Data Grid to Accelerate Gravitational Wave Discovery

scientific article

BioWorkbench: a high-performance framework for managing and analyzing bioinformatics experiments

scientific article published on 29 August 2018

Community Organizations: Changing the Culture in Which Research Software Is Developed and Sustained

scientific article published on 07 December 2018

Conceptualization of a US Research Software Sustainability Institute (URSSI)

scientific article published on 11 May 2018

Constructing a Social Content Delivery Network for eScience

Critical perspectives on large-scale distributed applications and production Grids

article

Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform

scientific article

Cyberinfrastructure Usage Modalities on the TeraGrid

DA-TC: a novel application execution model in multicluster systems

article

Data-Oriented Distributed Computing for Science: Reality and Possibilities

Data-intensive CyberShake computations on an opportunistic cyberinfrastructure

Design and analysis of data management in scalable parallel scripting

Distributed Systems and Algorithms

scholarly article by Omer Rana et al published 2010 in Lecture Notes in Computer Science

Distributed computing practice for large-scale science and engineering applications

article published in 2012

Embedded/Real-Time Systems

Enabling Remote Management of FaaS Endpoints with Globus Compute Multi-User Endpoints

scientific article published on 18 July 2024

Engineering Academic Software ⬇️

2017 scientific article

FAIR Principles for Research Software (FAIR4RS Principles)

FAIR for AI: An interdisciplinary and international community building perspective

scientific article published on 26 July 2023

Foundations for Open Scholarship Strategy Development

Four simple recommendations to encourage best practices in research software

scientific article

Fourth Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE4)

article by Daniel S. Katz et al published 2018 in Journal of open research software

GADA 2008 PC Co-chairs’ Message

Generating Complex Astronomy Workflows

scholarly article

Giving software its due through community-driven review and publication

Group authorship, an excellent opportunity laced with ethical, legal and technical challenges

scientific article published on 6 March 2024

High Performance Computing Systems for Autonomous Spaceborne Missions

article published in 2001

How does software fit into the FDO landscape?

scientific article published in 2022

Initial results for automated computational modeling of patient-specific electromagnetic hyperthermia.

scientific article published on March 1992

Introducing distributed dynamic data-intensive (D3) science: Understanding applications and infrastructure

Introducing the FAIR Principles for research software

Scholarly article, 2022

JETS: Language and System Support for Many-Parallel-Task Workflows

Job and data clustering for aggregate use of multiple production cyberinfrastructures

article

Journal Production Guidance for Software and Data Citations ⬇️

journal article from 'Scientific Data' published in 2023

Journal of Open Source Software (JOSS): design and first-year review

scientific article published on 12 February 2018

Louisiana: a model for advancing regional e-Research through cyberinfrastructure

scientific article (publication date: 28 June 2009)

Managing genomic variant calling workflows with Swift/T

scientific article published on 09 July 2019

Montage: a grid portal and software toolkit for science-grade astronomical image mosaicking

Montage: a grid-enabled engine for delivering custom science-grade mosaics on demand

NSF 19-501 AccelNet Proposal: Community of Open Scholarship Grassroots Networks (COSGN)

scientific article

Novel Approaches Toward Scalable Composable Workflows in Hyper-Heterogeneous Computing Environments

scientific article published on 10 November 2023

Novel submission modes for tightly coupled jobs across distributed resources for reduced time-to-solution

scientific article published in June 2009

Open Science strategies for NIH data management, sharing, and citation

Open Science strategies for NIH data management, sharing, and citation

Optimizing Workflow Data Footprint

Parallelizing the execution of sequential scripts

Pegasus: A Framework for Mapping Complex Scientific Workflows onto Distributed Systems

Pilot abstractions for compute, data, and network

Publish your software: Introducing the Journal of Open Source Software (JOSS)

scientific article published on 11 May 2018

Recent advances in e-Science

article published in 2013

Recognizing the value of software: a software citation guide

scientific article published on 12 January 2021

Report on the Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3)

Scalable, finite element analysis of electromagnetic scattering and radiation

Science applications of the Montage image mosaic engine

Software Citation Principles ⬇️

2016 scientific article

Software Citation Principles

Software Citation Principles

Software Citation Principles

Software Citation Principles

Software Citation Principles

Software Must be Recognised as an Important Output of Scholarly Research

scientific article published on 22 December 2021

Software citation

scientific article published on 28 December 2021

Software vs. data in the context of citation

Software vs. data in the context of citation

Software-implemented fault detection for high-performance space applications

scholarly article

Special Issue: Grid Computing, High Performance and Distributed Application

Special Section: Grid computing, high-performance and distributed applications

Special issue on software citation, indexing, and discoverability

scientific article published on 26 March 2024

Strategies for biomedical software management, sharing, and citation

Strategies for biomedical software management, sharing, and citation

Swift: A language for distributed parallel scripting

article published in 2011

Taking a fresh look at FAIR for research software

scientific article published on 14 March 2021

Taking a fresh look at FAIR for research software

scientific article published on 14 May 2021

Ten Simple Rules for Taking Advantage of Git and GitHub

scientific article (publication date: July 2016)

Ten Simple Rules for Taking Advantage of git and GitHub

The Challenge and Promise of Software Citation for Credit, Identification, Discovery, and Reuse ⬇️

scholarly article by Kyle E. Niemeyer et al published 6 October 2016 in ACM Journal of Data and Information Quality

The Four Pillars of Research Software Engineering

scientific article published on 11 February 2020

The Journal of Open Source Software (JOSS): Bringing Open-Source Software Practices to the Scholarly Publishing Community for Authors, Reviewers, Editors, and Publishers

scientific article published on 4 February 2025

The Pegasus portal

The State of Sustainable Research Software: Learning from the Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE5.1)

scholarly article by Daniel S. Katz et al published 2019 in Journal of open research software

The challenges of theory-software translation

scientific article published on 02 October 2020

The importance of software citation

scientific article published on 19 October 2020

The principles of tomorrow's university

Thoughts on Learning Human and Programming Languages

scientific article published in January 2024

Topic 1: Support Tools and Environments

Turbine

Academic paper

Understanding the multifaceted geospatial software ecosystem: a survey approach

scientific article published on 19 October 2020

Workflow task clustering for best effort systems with Pegasus

eScience today and tomorrow

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