List of works by Amos Bairoch

'98 Escherichia coli SWISS-2DPAGE database update.

scientific article published in August 1998

2-D databases on the World Wide Web.

scientific article

A Preliminary Study on the Prediction of Human Protein Functions

A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17.

scientific article

A comprehensive web resource on RNA helicases from the baker's yeast Saccharomyces cerevisiae

scientific article

A cross-reference table between the Protein Data Bank of macromolecular structures and the National Biomedical Research Foundation-Protein Identification Resource amino acid sequence data bank

scientific article

A diverse transketolase family that includes the RecP protein of Streptococcus pneumoniae, a protein implicated in genetic recombination

scientific article

A generalized profile syntax for biomolecular sequence motifs and its function in automatic sequence interpretation

scientific article

A high-stringency blueprint of the human proteome

scientific article published on 16 October 2020

A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications ⬇️

scientific article published on 8 October 2024

A large-scale evaluation of computational protein function prediction

scientific article

A large-scale protein-function database

scientific article published on November 2010

A molecular scanner to automate proteomic research and to display proteome images

scientific article

A new bioinformatics tool to help assess the significance of BRCA1 variants.

scientific article published on 11 July 2018

A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server

scientific article (publication date: June 1994)

A novel zinc-binding motif found in two ubiquitous deaminase families

scientific article

A possible mechanism for metal-ion induced DNA-protein dissociation in a family of prokaryotic transcriptional regulators

scientific article published on May 1993

A standard nomenclature for referencing and authentication of pluripotent stem cells

scientific article published in January 2018

A superfamily of metalloenzymes unifies phosphopentomutase and cofactor-independent phosphoglycerate mutase with alkaline phosphatases and sulfatases

scientific article (publication date: August 1998)

A testis-specific gene, TPTE, encodes a putative transmembrane tyrosine phosphatase and maps to the pericentromeric region of human chromosomes 21 and 13, and to chromosomes 15, 22, and Y

scientific article

A unique signature identifies a family of zinc-dependent metallopeptidases.

scientific article published in January 1989

Amino acid sequence determination by gas chromatography—mass spectrometry of permethylated peptides

article published in 1983

Animal toxins: How is complexity represented in databases?

scientific article

Annotating single amino acid polymorphisms in the UniProt/Swiss-Prot knowledgebase.

scientific article

Annotation of functional impact of voltage-gated sodium channel mutations

scientific article

Annotation of glycoproteins in the SWISS-PROT database

scientific article published in February 2001

Annotation of post-translational modifications in the Swiss-Prot knowledge base

scientific article

Arac/XylS family of transcriptional regulators

scientific article (publication date: December 1997)

Automated annotation of microbial proteomes in SWISS-PROT.

scientific article published in February 2003

Bioinformatics for Human Proteomics: Current State and Future Status

Bioinformatics for Human Proteomics: Current State and Future Status

Brain Metastasis Cell Lines Panel: a public resource of organotropic cell lines

scientific article published on 08 July 2020

C11orf83, a mitochondrial cardiolipin-binding protein involved in bc1 complex assembly and supercomplex stabilization

scientific article

C2orf62 and TTC17 are involved in actin organization and ciliogenesis in zebrafish and human

scientific article

CLASTR: The Cellosaurus STR similarity search tool ‐ A precious help for cell line authentication

scientific article published on 4 October 2019

CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens

scientific article

Calcium-binding affinity and calcium-enhanced activity of Clostridium thermocellum endoglucanase D.

scientific article published on January 1990

Calling on a million minds for community annotation in WikiProteins

scientific article

Cell Lines as Biological Models: Practical Steps for More Reliable Research

scientific article published on 15 June 2019

Cellosaurus

on-line knowledge resource on cell lines

Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase

scientific article (publication date: 2009)

Complementation of the DNA repair defect in xeroderma pigmentosum group G cells by a human cDNA related to yeast RAD2

scientific article

Constructing a 2-D database for the World Wide Web.

scientific article

Construction of the gyrB Database for the Identification and Classification of Bacteria

scientific article published on 01 January 1998

Converting neXtProt into Linked Data and nanopublications

scientific article

Correction to "Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project"

scientific article published on 25 February 2019

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

scientific article

Current status of the SWISS-2DPAGE database

scientific article published on January 1998

D Databases on the World Wide Web

scholarly article

DERA is the human deoxyribose phosphate aldolase and is involved in stress response

scientific article

Data Integration in Proteomics

Deep Question Answering for protein annotation

scientific article

Detailed peptide characterization using PEPTIDEMASS--a World-Wide-Web-accessible tool.

scientific article published in March 1997

EF-hand motifs in inositol phospholipid-specific phospholipase C

scientific article

ENZYME

database of biological enzymes

Eukaryotic aldehyde dehydrogenase (ALDH) genes: human polymorphisms, and recommended nomenclature based on divergent evolution and chromosomal mapping

scientific article (publication date: August 1999)

Evidence for the existence of a mutated enkephalin sequence in preproenkephalin.

scientific article published in August 1982

Evolutionary relationships between catabolic pathways for aromatics: conservation of gene order and nucleotide sequences of catechol oxidation genes of pWW0 and NAH7 plasmids

scientific article published in December 1987

ExPASy: The proteomics server for in-depth protein knowledge and analysis

scientific article

Exploring the Uncharacterized Human Proteome Using neXtProt

Federated two-dimensional electrophoresis database: a simple means of publishing two-dimensional electrophoresis data

scientific article published on March 1996

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support

scientific article

FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification

scientific article

From genome to proteome--aim of human proteomics.

scientific article published in October 2004

Functional identification of APIP as human mtnB, a key enzyme in the methionine salvage pathway

scientific article published in 2012

Functionally and structurally relevant residues in PROSITE motif descriptors

Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students

scientific article

GENOME MAPS 8: Building Gene Families

scientific article published in Science

GPCRDB: an information system for G protein-coupled receptors

scientific article (published in 1998)

Go hunting in sequence databases but watch out for the traps

scientific article published in October 1996

HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot

scientific article

High-quality protein knowledge resource: SWISS-PROT and TrEMBL.

scientific article

High-throughput mass spectrometric discovery of protein post-translational modifications.

scientific article

Human aldehyde dehydrogenase genes: alternatively spliced transcriptional variants and their suggested nomenclature

scientific article

Human liver protein map: Update 1993

article by Graham J. Hughes et al published 1993 in Electrophoresis

Human liver protein map: a reference database established by microsequencing and gel comparison

scientific article (publication date: December 1992)

Human liver protein map: update 1993

scientific article

ICEPO: the ion channel electrophysiology ontology

scientific article published on 7 April 2016

Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection

scientific article

Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection

article

Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines

Industrial-scale proteomics: from liters of plasma to chemically synthesized proteins

scientific article

Infrastructure for the life sciences: design and implementation of the UniProt website

scientific article (publication date: 8 May 2009)

Inside SWISS-2DPAGE database

scientific article

IntAct: an open source molecular interaction database

scientific article

IntEnz, the integrated relational enzyme database

scientific article

Integrating two-dimensional gel databases using the Melanie II software.

scientific article published in December 1996

InterPro, progress and status in 2005

scientific article

InterPro--an integrated documentation resource for protein families, domains and functional sites

scientific article (publication date: December 2000)

InterPro: an integrated documentation resource for protein families, domains and functional sites

scientific article

InterPro: the integrative protein signature database

scientific article

Interleukin-1-inducible genes in endothelial cells. Cloning of a new gene related to C-reactive protein and serum amyloid P component

scientific article

Internet Resources for Protein Identification and Characterization

Key challenges for the creation and maintenance of specialist protein resources

scientific article

Kinases and cancer

scientific article published in March 2018

LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces

scientific article

LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces

scientific article published on 01 September 1994

Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project

scientific article published on 17 September 2018

Low molecular weight proteins: a challenge for post-genomic research.

scientific article

Managing the data explosion. A report on the HUPO-PSI Workshop. August 2008, Amsterdam, The Netherlands

scientific article published in February 2009

Mass spectrometry in high-throughput proteomics: ready for the big time.

scientific article published in September 2010

Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins

scientific article

Missing protein landscape of human chromosomes 2 and 14: Progress and current status

scientific article (publication date: 4 November 2016)

Molecular basis of symbiosis between Rhizobium and legumes

scientific article (publication date: 22 May 1997)

Multiple parameter cross-species protein identification using MultiIdent--a world-wide web accessible tool.

scientific article published in December 1998

N-terminome analysis of the human mitochondrial proteome.

scientific article published on 08 June 2015

NEWT, a new taxonomy portal

scientific article

New developments in linking of biological databases and computer-generation of annotation: SWISS-PROT and its computer-annotated supplement TREMBL

New developments in the InterPro database

scientific article

New families in the classification of glycosyl hydrolases based on amino acid sequence similarities

scientific article

New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling.

scientific article published in April 1998

Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases

scientific article

Ongoing and future developments at the Universal Protein Resource

scientific article

OpenFluDB, a database for human and animal influenza virus

scientific article

PA26 is a candidate gene for heterotaxia in humans: identification of a novel PA26-related gene family in human and mouse

scientific article

PC/GENE

software package for the analysis of genes and proteines

PROSITE

database of protein domains, families and functional sites

PROSITE, a protein domain database for functional characterization and annotation

scientific article

PROSITE: a dictionary of sites and patterns in proteins

scientific article

PROSITE: a dictionary of sites and patterns in proteins

scientific article published in May 1992

PROSITE: a documented database using patterns and profiles as motif descriptors

scientific article (publication date: September 2002)

PROSITE: recent developments

scientific article

Plant protein annotation in the UniProt knowledgebase

scientific article

Plasma and red blood cell protein maps: update 1993

scientific article (publication date: 1993)

Post-translational modifications: a challenge for proteomics and bioinformatics

scientific article published in June 2004

Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases

scientific article (publication date: December 1991)

ProRule: a new database containing functional and structural information on PROSITE profiles

scientific article

Proposals for the naming of chloroplast genes. III. Nomenclature for open reading frames encoded in chloroplast genomes

article

Protein Databases

article from 2005

Protein Identification and Analysis Tools on the ExPASy Server

article

Protein Sequence Variants: Resources and Tools

Protein Variations: Resources and Tools

Protein annotation: detective work for function prediction

scientific article published in June 1998

Protein identification and analysis tools in the ExPASy server

scientific article (publication date: 1999)

Protein identification with N and C-terminal sequence tags in proteome projects

scientific article

Protein sequence annotation in the genome era: the annotation concept of SWISS-PROT+TREMBL.

scientific article published in January 1997

Protein sequence databases

Protein variety and functional diversity: Swiss-Prot annotation in its biological context

scientific article

Proteome Analysis

Proteome Databases

article

Proto-vav and gene expression.

scientific article published in July 1992

Querying NeXtProt Nanopublications and Their Value for Insights on Sequence Variants and Tissue Expression

scientific article published on 11 July 2018

Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression

scientific article

Recent improvements to the PROSITE database

scientific article

Representation of functional information in the SWISS-PROT data bank

scientific article

Review of the selected proceedings of the Fifth International Workshop on Data Integration in the Life Sciences 2008.

scientific article

SEQANALREF: a sequence analysis bibliographic reference databank

scientific article

SWISS-2DPAGE: a database of two-dimensional gel electrophoresis images

scientific article published on November 1993

SWISS-PROT: connecting biomolecular knowledge via a protein database.

scientific article

ScanProsite: a reference implementation of a PROSITE scanning tool

scientific article published in January 2002

ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins

scientific article

Sequence patterns in protein kinases.

scientific article published in January 1988

Sequence similarities in calcium-binding proteins

scientific article published in Nature

Sequences and topology: Predicting evolution.

scientific article published in June 1997

Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times!

scientific article (publication date: 2000)

Sharing of worldwide spread knowledge using hypermedia facilities & fast communication protocols (Mosaic and World Wide Web): the example of ExPASy

scientific article

Signal Traitment and Virtual Images Production (1/2)

article

Standard guidelines for the chromosome-centric human proteome project

scientific article published on 26 March 2012

Standards for Reporting Enzyme Data: The STRENDA Consortium: What it aims to do and why it should be helpful

article by Keith F. Tipton et al published May 2014 in Perspectives in Science

Suggestion to research groups working on protein and peptide sequence

scientific article published on May 1982

Swiss-Prot

The manually curated portion of the UniProt database of protein sequence information.

Swiss-Prot: juggling between evolution and stability

scientific article published in March 2004

The 1999 SWISS-2DPAGE database update

scientific article published on January 2000

The 20 years of PROSITE

scientific article

The ABCD database: a repository for chemically defined antibodies

scientific article published on 01 January 2020

The Cellosaurus, a cell-line knowledge resource ⬇️

scientific article

The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome.

scientific article

The ENZYME data bank

scientific article (publication date: September 1994)

The ENZYME data bank

scientific article

The ENZYME data bank in 1995

scientific article

The ENZYME data bank in 1999

scientific article

The ENZYME database in 2000

scientific article

The Feature Viewer: A visualization tool for positional annotations on a sequence

scientific article published on 27 January 2020

The Impact of 3D Structures on a Protein Knowledgebase: From Proteins to Systems

The InterPro database, 2003 brings increased coverage and new features

scientific article (publication date: 2003)

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

scientific article (publication date: 2001)

The PROSITE database, its status in 1995.

scientific article

The PROSITE database, its status in 1997.

scientific article

The PROSITE database, its status in 1999

scientific article

The PROSITE database, its status in 2002

scientific article (publication date: 2002)

The PROSITE database.

scientific article

The PROSITE dictionary of sites and patterns in proteins, its current status

scientific article

The SIB Swiss Institute of Bioinformatics Semantic Web of data

scientific article published on 25 October 2023

The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis, its status in 1995.

scientific article

The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis.

scientific article

The SWISS-2DPAGE database: what has changed during the last year

scientific article published on January 1999

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

scientific article (publication date: 2003)

The SWISS-PROT protein sequence data bank

scientific article

The SWISS-PROT protein sequence data bank and its new supplement TREMBL

scientific article

The SWISS-PROT protein sequence data bank and its supplement TrEMBL

scientific article

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998.

scientific article

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999.

scientific article

The SWISS-PROT protein sequence data bank, recent developments

scientific article

The SWISS-PROT protein sequence data bank.

scientific article

The SWISS-PROT protein sequence data bank: current status

scientific article

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

scientific article

The SWISS-PROT protein sequence database: its relevance to human molecular medical research.

scientific article published in May 1997

The Sulfinator: predicting tyrosine sulfation sites in protein sequences

scientific article published in May 2002

The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools

scientific article

The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants

scientific article published on May 2004

The UDP glycosyltransferase gene superfamily: recommended nomenclature update based on evolutionary divergence

scientific article

The UniProtKB/Swiss-Prot knowledgebase and its plant proteome annotation program

scientific article

The Universal Protein Resource (UniProt)

scientific article

The Universal Protein Resource (UniProt): an expanding universe of protein information

scientific article

The application of bioinformatics to mass spectrometry.

scientific article published in October 2002

The future of annotation/biocuration

The human proteome project: Current state and future direction.

scientific article published on 29 April 2011

The human proteomics initiative (HPI).

scientific article

The neXtProt knowledgebase in 2020: data, tools and usability improvements

scientific article published on 01 January 2020

The neXtProt knowledgebase on human proteins: 2017 update

scientific article (publication date: 29 November 2016)

The neXtProt knowledgebase on human proteins: current status

scientific article

The xylS gene positive regulator of TOL plasmid pWWO: identification, sequence analysis and overproduction leading to constitutive expression of meta cleavage operon

scientific article published in May 1987

The yeast SWISS-2DPAGE database

scientific article published on March 1996

Towards BioDBcore: a community-defined information specification for biological databases

scientific article

Towards BioDBcore: a community-defined information specification for biological databases

scientific article (publication date: 2011)

Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase.

scientific article published on 15 December 2004

Triage by ranking to support the curation of protein interactions

scientific article

Two-dimensional gel electrophoresis for proteome projects: the effects of protein hydrophobicity and copy number

scientific article published in June 1998

Two-dimensional gel electrophoresis ofEscherichia coli homogenates: TheEscherichia coli SWISS-2DPAGE database

article

UniPathway: a resource for the exploration and annotation of metabolic pathways

scientific article published on 18 November 2011

UniProt: the Universal Protein knowledgebase

scientific article from 2004

UniProtKB/Swiss-Prot

scientific article

UniProtKB/Swiss-Prot Manual and Automated Annotation of Complete Proteomes: The Dictyostelium discoideum Case Study

article

UniProtKB/Swiss-Prot: New and Future Developments

Updating the sequence-based classification of glycosyl hydrolases

scientific article

Using PC/GENE for protein and nucleic acid analysis

scientific article

ViralZone: a knowledge resource to understand virus diversity

scientific article

cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily

scientific article

neXtProt: a knowledge platform for human proteins

scientific article

neXtProt: organizing protein knowledge in the context of human proteome projects

scientific article

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