List of works - Eric Bareke

A benchmark for statistical microarray data analysis that preserves actual biological and technical variance

scientific article

A novel mathematical basis for predicting somatic single nucleotide variants from next-generation sequencing

Abstract 2484: Whole-exome sequencing of a rare case of familial childhood acute lymphoblastic leukemia

article published in 2012

Abstract 4335: The genomic landscape of childhood pre-B acute lymphoblastic leukemia

Abstract P6-03-03: The Q-CROC-3 project reveals novel genomic alterations in triple negative breast cancers in residual tumors after neoadjuvant chemotherapy

article published in 2016

Adaptation of a Bioinformatics Microarray Analysis Workflow for a Toxicogenomic Study in Rainbow Trout

scientific article

Bmp signaling maintains a mesoderm progenitor cell state in the mouse tailbud.

scientific article published on 13 July 2017

Chromatin dysregulation associated with NSD1 mutation in head and neck squamous cell carcinoma

scientific article published on 01 February 2021

Correction: PathEx: A novel multi factors based datasets selector web tool.

scientific article published on 2 November 2010

Debunking Occam's razor: Diagnosing multiple genetic diseases in families by whole-exome sequencing

scientific article published on 7 February 2017

Functional analysis: evaluation of response intensities--tailoring ANOVA for lists of expression subsets

scientific article

Germline and somatic FGFR1 abnormalities in dysembryoplastic neuroepithelial tumors

scientific article published on 26 February 2016

H3.1 K36M mutation in a congenital-onset soft tissue neoplasm.

scientific article published on 16 May 2017

Joint genotype inference with germline and somatic mutations

scientific article

MG-109 Revisiting a clinical diagnosis 15 years later with the aid of whole exome sequencing: Osteopetrosis versus harderophorphyria

Meconium ileus in a Lebanese family secondary to mutations in the GUCY2C gene

scientific article published on 5 November 2014

Meta-analysis and gene set analysis of archived microarrays suggest implication of the spliceosome in metastatic and hypoxic phenotypes

scientific article published on 31 January 2014

Meta-analysis of archived DNA microarrays identifies genes regulated by hypoxia and involved in a metastatic phenotype in cancer cells

scientific article

Methylome analysis and whole-exome sequencing reveal that brain tumors associated with encephalocraniocutaneous lipomatosis are midline pilocytic astrocytomas

scientific article published on 24 August 2018

Neu-Laxova syndrome presenting prenatally with increased nuchal translucency and cystic hygroma: The utility of exome sequencing in deciphering the diagnosis

scientific article published on 05 March 2019

Next-generation sequencing for diagnosis of rare diseases in the neonatal intensive care unit

scientific article published on 30 May 2016

PHOENIX, a web interface for (re)analysis of microarray data

PathEx: a novel multi factors based datasets selector web tool

scientific article

Recessive mutation in CD2AP causes focal segmental glomerulosclerosis in humans and mice

scientific article published on 26 October 2018

Resolution of refractory hypotension and anuria in a premature newborn with loss-of-function of ACE

article published in 2015

Resolution of refractory hypotension and anuria in a premature newborn with loss-of-function of ACE.

scientific article published on 21 April 2015

TDP-43 stabilizes G3BP1 mRNA: relevance to amyotrophic lateral sclerosis/frontotemporal dementia

scientific article published on 01 December 2021

TRPV4 and KRAS and FGFR1 gain-of-function mutations drive giant cell lesions of the jaw

scientific article published in Nature Communications

The histone mark H3K36me2 recruits DNMT3A and shapes the intergenic DNA methylation landscape

scientific article published on 04 September 2019

Whole-exome sequencing as a diagnostic tool: current challenges and future opportunities

scientific article published on 09 May 2015

Whole-exome sequencing is a valuable diagnostic tool for inherited peripheral neuropathies: Outcomes from a cohort of 50 families.

scientific article published on 14 July 2017

gViz, a novel tool for the visualization of co-expression networks

scientific article

List of works by Eric Bareke

A benchmark for statistical microarray data analysis that preserves actual biological and technical variance

A novel mathematical basis for predicting somatic single nucleotide variants from next-generation sequencing

Abstract 2484: Whole-exome sequencing of a rare case of familial childhood acute lymphoblastic leukemia

Abstract 4335: The genomic landscape of childhood pre-B acute lymphoblastic leukemia

Abstract P6-03-03: The Q-CROC-3 project reveals novel genomic alterations in triple negative breast cancers in residual tumors after neoadjuvant chemotherapy

Adaptation of a Bioinformatics Microarray Analysis Workflow for a Toxicogenomic Study in Rainbow Trout

Bmp signaling maintains a mesoderm progenitor cell state in the mouse tailbud.

Chromatin dysregulation associated with NSD1 mutation in head and neck squamous cell carcinoma

Correction: PathEx: A novel multi factors based datasets selector web tool.

Debunking Occam's razor: Diagnosing multiple genetic diseases in families by whole-exome sequencing

Functional analysis: evaluation of response intensities--tailoring ANOVA for lists of expression subsets

Germline and somatic FGFR1 abnormalities in dysembryoplastic neuroepithelial tumors

H3.1 K36M mutation in a congenital-onset soft tissue neoplasm.

Joint genotype inference with germline and somatic mutations

MG-109 Revisiting a clinical diagnosis 15 years later with the aid of whole exome sequencing: Osteopetrosis versus harderophorphyria

Meconium ileus in a Lebanese family secondary to mutations in the GUCY2C gene

Meta-analysis and gene set analysis of archived microarrays suggest implication of the spliceosome in metastatic and hypoxic phenotypes

Meta-analysis of archived DNA microarrays identifies genes regulated by hypoxia and involved in a metastatic phenotype in cancer cells

Methylome analysis and whole-exome sequencing reveal that brain tumors associated with encephalocraniocutaneous lipomatosis are midline pilocytic astrocytomas

Neu-Laxova syndrome presenting prenatally with increased nuchal translucency and cystic hygroma: The utility of exome sequencing in deciphering the diagnosis

Next-generation sequencing for diagnosis of rare diseases in the neonatal intensive care unit

PHOENIX, a web interface for (re)analysis of microarray data

PathEx: a novel multi factors based datasets selector web tool

Recessive mutation in CD2AP causes focal segmental glomerulosclerosis in humans and mice

Resolution of refractory hypotension and anuria in a premature newborn with loss-of-function of ACE

Resolution of refractory hypotension and anuria in a premature newborn with loss-of-function of ACE.

TDP-43 stabilizes G3BP1 mRNA: relevance to amyotrophic lateral sclerosis/frontotemporal dementia

TRPV4 and KRAS and FGFR1 gain-of-function mutations drive giant cell lesions of the jaw

The histone mark H3K36me2 recruits DNMT3A and shapes the intergenic DNA methylation landscape

Whole-exome sequencing as a diagnostic tool: current challenges and future opportunities

Whole-exome sequencing is a valuable diagnostic tool for inherited peripheral neuropathies: Outcomes from a cohort of 50 families.

gViz, a novel tool for the visualization of co-expression networks