List of works by Pedro Alexandre Favoretto Galante

A Genome-Wide Landscape of Retrocopies in Primate Genomes

scientific article

A Mouse Model of Targeted Musashi1 Expression in Whole Intestinal Epithelium Suggests Regulatory Roles in Cell Cycle and Stemness

scientific article

A comprehensive in silico expression analysis of RNA binding proteins in normal and tumor tissue: Identification of potential players in tumor formation.

scientific article

A genetic cluster of patients with variant xeroderma pigmentosum with two different founder mutations.

scientific article published on 24 September 2016

A novel human G protein-coupled receptor is over-expressed in prostate cancer

scientific article

A potential role for intragenic miRNAs on their hosts' interactome.

scientific article

A score system for quality evaluation of RNA sequence tags: an improvement for gene expression profiling

scientific article

A straightforward assay to evaluate DNA integrity and optimize next-generation sequencing for clinical diagnosis in oncology.

scientific article published on 21 November 2017

Alternative polyadenylation allows differential negative feedback of human miRNA miR-579 on its host gene ZFR.

scientific article published on 23 March 2015

Alternative splicing and genetic diversity: silencers are more frequently modified by SNVs associated with alternative exon/intron borders

scientific article

Alternative splicing enriched cDNA libraries identify breast cancer-associated transcripts

scientific article

Alternative splicing: a bioinformatics perspective

scientific article

Analysis of allelic differential expression in the human genome using allele-specific serial analysis of gene expression tags

scientific article published in February 2011

Antagonism between the RNA-binding protein Musashi1 and miR-137 and its potential impact on neurogenesis and glioblastoma development

scientific article published on 19 April 2019

Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data.

scientific article

Bioinformatics construction of the human cell surfaceome.

scientific article published on 15 September 2009

Common promoter elements in odorant and vomeronasal receptor genes.

scientific article

Comprehensive cancer-gene panels can be used to estimate mutational load and predict clinical benefit to PD-1 blockade in clinical practice.

scientific article

Comprehensive evaluation of the effectiveness of gene expression signatures to predict complete response to neoadjuvant chemoradiotherapy and guide surgical intervention in rectal cancer.

scientific article published on 25 March 2015

DSGeo: software tools for cross-platform analysis of gene expression data in GEO.

scientific article

Depletion of Ric-8B leads to reduced mTORC2 activity

scientific article published on 11 May 2020

Detection and evaluation of intron retention events in the human transcriptome.

scientific article published in May 2004

Different evolutionary strategies for the origin of caspase-1 inhibitors

scientific article published on 14 May 2008

Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual

scientific article (publication date: August 2011)

Evaluation of a large-scale biomedical data annotation initiative

scientific article

Functional genomics analyses of RNA-binding proteins reveal the splicing regulator SNRPB as an oncogenic candidate in glioblastoma

scientific article published on 10 June 2016

Gene copy-number polymorphism caused by retrotransposition in humans

scientific article

Gene expression changes associated with trajectories of psychopathology in a longitudinal cohort of children and adolescents

scientific article published on 17 March 2020

Genome-wide detection of serpentine receptor-like proteins in malaria parasites

scientific article

Global changes in nitration levels and DNA binding profile of Trypanosoma cruzi histones induced by incubation with host extracellular matrix

scientific article published on 29 May 2020

HPV-58 molecular variants exhibit different transcriptional activity

scientific article published on 19 October 2010

High IL-1R8 expression in breast tumors promotes tumor growth and contributes to impaired antitumor immunity.

scientific article published on 9 May 2017

Histopathological Characterization and Whole Exome Sequencing of Ectopic Thyroid: Fetal Architecture in a Functional Ectopic Gland from Adult Patient.

scientific article published on 8 February 2018

Host gene constraints and genomic context impact the expression and evolution of human microRNAs

scientific article published on 25 April 2016

ICRmax: an optimized approach to detect tumor-specific interchromosomal rearrangements for clinical application.

scientific article published on 7 February 2015

Identification and Validation of Potential Differential miRNA Regulation via Alternative Polyadenylation.

scientific article published in January 2018

Identification of FAM46D as a novel cancer/testis antigen using EST data and serological analysis.

scientific article published on 18 June 2009

Identification of agonists for a group of human odorant receptors.

scientific article published on 3 March 2015

Identification of potential regulatory motifs in odorant receptor genes by analysis of promoter sequences

scientific article

Intratumoral Genetic Heterogeneity in Rectal Cancer: Are Single Biopsies representative of the entirety of the tumor?

scientific article published in January 2017

Measuring plasma levels of three microRNAs can improve the accuracy for identification of malignant breast lesions in women with BI-RADS 4 mammography.

scientific article published on 11 September 2017

MiRIAD update: using alternative polyadenylation, protein interaction network analysis and additional species to enhance exploration of the role of intragenic miRNAs and their host genes

scientific article

MicroRNA Expression Signature Is Altered in the Cardiac Remodeling Induced by High Fat Diets.

scientific article published on 7 December 2015

Mutational analysis of genes coding for cell surface proteins in colorectal cancer cell lines reveal novel altered pathways, druggable mutations and mutated epitopes for targeted therapy

scientific article

ORESTES are enriched in rare exon usage variants affecting the encoded proteins.

scientific article published in October 2003

Overexpression of miR-21-5p as a predictive marker for complete tumor regression to neoadjuvant chemoradiotherapy in rectal cancer patients

scientific article

PVALB, a new Hürthle adenoma diagnostic marker identified through gene expression

scientific article

Patient-derived conditionally reprogrammed cells maintain intra-tumor genetic heterogeneity.

scientific article published on 6 March 2018

PositionMatcher: A Fast Custom-Annotation Tool for Short DNA Sequences.

scientific article published on March 2010

Proneural and mesenchymal glioma stem cells display major differences in splicing and lncRNA profiles

scientific article published on 16 January 2020

RCPedia: a database of retrocopied genes.

scientific article published on March 2013

Reboot: a straightforward approach to identify genes and splicing isoforms associated with cancer patient prognosis

scientific article published on 15 June 2021

Recurrent somatic mutation in DROSHA induces microRNA profile changes in Wilms tumour

scientific article published on 9 June 2014

Retroposed copies of RET gene: a somatically acquired event in medullary thyroid carcinoma

scientific article published on 09 July 2019

SPLOOCE: a new portal for the analysis of human splicing variants.

scientific article published on 12 October 2012

Sense-antisense pairs in mammals: functional and evolutionary considerations

scientific article

Setting up an intronic miRNA database.

scientific article published in January 2013

Signaling transcript profile of the asexual intraerythrocytic development cycle of Plasmodium falciparum induced by melatonin and cAMP.

scientific article published on September 2016

Splicing factors are differentially expressed in tumors

scientific article published on 30 December 2004

SurfaceomeDB: a cancer-orientated database for genes encoding cell surface proteins

scientific article

Systematic detection of putative tumor suppressor genes through the combined use of exome and transcriptome sequencing

scientific article

TSC2 rare germline variants in non-tuberous sclerosis patients with neuroendocrine neoplasias

scientific article published on 22 November 2017

The Effects of Neoadjuvant Chemoradiation in Locally Advanced Rectal Cancer-The Impact in Intratumoral Heterogeneity

scientific article published on 27 September 2019

The RNA-binding protein SERBP1 functions as a novel oncogenic factor in glioblastoma by bridging cancer metabolism and epigenetic regulation

scientific article published on 06 August 2020

The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags

scientific article published on 30 October 2003

The human cell surfaceome of breast tumors

scientific article published on 9 September 2013

The impact of SNPs on the interpretation of SAGE and MPSS experimental data

scientific article

The use of personalized biomarkers and liquid biopsies to monitor treatment response and disease recurrence in locally advanced rectal cancer after neoadjuvant chemoradiation

scientific article published on 6 October 2015

Towards large-scale sample annotation in gene expression repositories.

scientific article

Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line

scholarly article

Uncovering the mouse olfactory long non-coding transcriptome with a novel machine-learning model

scientific article published on 01 August 2019

Unveiling the Impact of the Genomic Architecture on the Evolution of Vertebrate microRNAs.

scientific article published on 21 March 2017

Whole-genome sequencing of 1,171 elderly admixed individuals from Brazil

scientific article published in 2022

miRIAD-integrating microRNA inter- and intragenic data

scientific article

miRNA-based signatures in cerebrospinal fluid as potential diagnostic tools for early stage Parkinson's disease.

scientific article published on 3 April 2018

sideRETRO: a pipeline for identifying somatic and polymorphic insertions of processed pseudogenes or retrocopies

scientific article published on 27 July 2020

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