Advanced search

Authors whose works are in public domain in at least one jurisdiction

List of works by Tommy Kaplan

A high-resolution enhancer atlas of the developing telencephalon

scientific article published on 31 January 2013

A hyperdynamic H3.3 nucleosome marks promoter regions in pluripotent embryonic stem cells.

scientific article published on 25 September 2017

A novel Bayesian DNA motif comparison method for clustering and retrieval

scientific article

Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing

scientific article

Ab initio prediction of transcription factor targets using structural knowledge

scientific article

CIS: compound importance sampling method for protein-DNA binding site p-value estimation

scientific article published on 28 September 2004

Cell cycle- and chaperone-mediated regulation of H3K56ac incorporation in yeast

scientific article

Comparative analysis of T4 DNA ligases and DNA polymerases used in chromosome conformation capture assays.

scientific article published on April 2015

Comparative parallel multi-omics analysis during the induction of pluripotent and trophectoderm states

scientific article published in 2022

Comprehensive human cell-type methylation atlas reveals origins of circulating cell-free DNA in health and disease

scientific article published in Nature Communications

Contribution of epigenetic mechanisms to variation in cancer risk among tissues.

scientific article published on 13 February 2017

Disease-associated astrocytes in Alzheimer's disease and aging

scientific article published on 27 April 2020

Dual functions of TAF7L in adipocyte differentiation

scientific article published on 8 January 2013

Dynamics of Replication-Independent Histone Turnover in Budding Yeast

scientific article published in Science

Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition

scientific article

Evaluation of PSI-BLAST alignment accuracy in comparison to structural alignments.

scientific article published on November 2000

Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression

scientific article published on 12 September 2013

Gene expression: Running to stand still

scientific article published on 11 April 2012

Genome-wide analysis of androgen receptor targets reveals COUP-TF1 as a novel player in human prostate cancer

scientific article

Genome-wide search for Zelda-like chromatin signatures identifies GAF as a pioneer factor in early fly development.

scientific article published on 4 July 2017

Genomic retargeting of p53 and CTCF is associated with transcriptional changes during oncogenic HRas-induced transformation

scientific article published on 25 November 2020

Glimmers in the midnight zone: characterization of aligned identical residues in sequence-dissimilar proteins sharing a common fold.

scientific article

Hierarchical role for transcription factors and chromatin structure in genome organization along adipogenesis.

scientific article

High throughput determination of TGFβ1/SMAD3 targets in A549 lung epithelial cells

scientific article

Large-scale discovery of enhancers from human heart tissue

scientific article published on 4 December 2011

Nucleosome positioning from tiling microarray data

scientific article

Post-transcriptional 3´-UTR cleavage of mRNA transcripts generates thousands of stable uncapped autonomous RNA fragments.

scientific article published on 11 December 2017

Promoter-enhancer interactions identified from Hi-C data using probabilistic models and hierarchical topological domains.

scientific article published on 21 December 2017

Quantitative Models of the Mechanisms that Control Genome-Wide Patterns of Animal Transcription Factor Binding

scientific article published on January 1, 2012

Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development

scientific article

Roles for H2A.Z and its acetylation in GAL1 transcription and gene induction, but not GAL1-transcriptional memory

scientific article

Single-nucleosome mapping of histone modifications in S. cerevisiae

scientific article

Stable Binding of the Conserved Transcription Factor Grainy Head to its Target Genes Throughout Drosophila melanogaster Development

scientific article published on 22 December 2016

Structure and function of a transcriptional network activated by the MAPK Hog1.

scientific article published on 19 October 2008

TAF7L modulates brown adipose tissue formation

scientific article

Taf7l cooperates with Trf2 to regulate spermiogenesis

scientific article published on 30 September 2013

Triangular correlation (TrC) between cancer aggressiveness, cell uptake capability, and cell deformability

scientific article published on 15 January 2020

Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition

scientific article

Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo.

scientific article

Paulina is supported by:

About Paulina

Help