List of works - Dominika Borek

A trimethoprim derivative impedes antibiotic resistance evolution

scientific article published on 19 May 2021

An Intrinsically Disordered Peptide from Ebola Virus VP35 Controls Viral RNA Synthesis by Modulating Nucleoprotein-RNA Interactions

scientific article

Comparative genome sequencing reveals chemotype-specific gene clusters in the toxigenic black mold Stachybotrys

scientific article

Complete Genome of Achalarus lyciades, The First Representative of the Eudaminae Subfamily of Skippers

scientific article published in August 2017

Complete genome of Pieris rapae, a resilient alien, a cabbage pest, and a source of anti-cancer proteins

scientific article

Complete genomes of Hairstreak butterflies, their speciation, and nucleo-mitochondrial incongruence

scientific article

Crystal Structure of Cardiac Troponin C Regulatory Domain in Complex with Cadmium and Deoxycholic Acid Reveals Novel Conformation

scientific article

Crystal packing of plant-type L-asparaginase from Escherichia coli

scientific article

Crystal structure and putative function of small Toprim domain-containing protein from Bacillus stearothermophilus

scientific article

Crystal structure of active site mutant of antileukemic L-asparaginase reveals conserved zinc-binding site

scientific article

Crystal structure of the human NK1 tachykinin receptor

scientific article published on 11 December 2018

Crystal structure of the human sterol transporter ABCG5/ABCG8.

scientific article published on 04 May 2016

Crystallization and preliminary X-ray analysis of Ebola VP35 interferon inhibitory domain mutant proteins

scientific article

Crystallization and preliminary X-ray diffraction analysis of Val57 mutants of the amyloidogenic protein human cystatin C.

scientific article published on 26 November 2011

Crystallization and preliminary crystallographic studies of a newL-asparaginase encoded by theEscherichia coligenome

article

Crystallization and preliminary crystallographic studies of five crystal forms of Escherichia coli L-asparaginase II (Asp90Glu mutant).

scientific article published on 21 December 2001

DENZOandSCALEPACK

Data publication with the structural biology data grid supports live analysis

scientific article

Development of RNA Aptamers Targeting Ebola Virus VP35

scientific article

Diffraction data analysis in the presence of radiation damage

scientific article

Disruption of Wnt/β-Catenin Signaling and Telomeric Shortening Are Inextricable Consequences of Tankyrase Inhibition in Human Cells

scientific article

Divergent kinase regulates membrane ultrastructure of the parasitophorous vacuole

scientific article published on 08 March 2019

Ebola virus VP24 targets a unique NLS binding site on karyopherin alpha 5 to selectively compete with nuclear import of phosphorylated STAT1.

scientific article

Everything Happens at Once – Deconvolving Systematic Effects in X-ray Data Processing

Expression, purification and catalytic activity of Lupinus luteus asparagine beta-amidohydrolase and its Escherichia coli homolog

scientific article

Extracellular Architecture of the SYG-1/SYG-2 Adhesion Complex Instructs Synaptogenesis

scientific article

Functional diversification of the NleG effector family in enterohemorrhagic

article published in the Proceedings of the National Academy of Sciences of the United States of America

High-resolution cryo-EM reconstructions in the presence of substantial aberrations

scientific article published on 26 March 2020

Identification of patterns in diffraction intensities affected by radiation exposure

scientific article

In Silico Derived Small Molecules Bind the Filovirus VP35 Protein and Inhibit Its Polymerase Cofactor Activity

scientific article

Marburg virus RNA synthesis is inhibited by a synthetic anti-VP35 antibody

scientific article published on 04 June 2019

Measurement errors and their consequences in protein crystallography ⬇️

scientific article published on October 23, 2003

Multiparametric scaling of diffraction intensities

scientific article (publication date: May 2003)

NMR and crystallographic structural studies of the extremely stable monomeric variant of human cystatin C with single amino acid substitution.

scientific article

Optimal structure determination from sub-optimal diffraction data

scientific article published in January 2022

Real-space analysis of radiation-induced specific changes with independent component analysis

Skipper genome sheds light on unique phenotypic traits and phylogeny

scientific article published on 27 August 2015

Speciation in Cloudless Sulphurs Gleaned from Complete Genomes

scientific article

Structural and Functional Characterization of Reston Ebola Virus VP35 Interferon Inhibitory Domain

scientific article

Structural basis for CoREST-dependent demethylation of nucleosomes by the human LSD1 histone demethylase

scientific article published in August 2006

Structural basis for Marburg virus VP35-mediated immune evasion mechanisms

scientific article

Structural basis for dsRNA recognition and interferon antagonism by Ebola VP35

scientific article

Structural basis for human respiratory syncytial virus NS1-mediated modulation of host responses.

scientific article published on 30 June 2017

Structural characterization of V57D and V57P mutants of human cystatin C, an amyloidogenic protein

scientific article

Structure and Mechanism of a Eukaryotic FMN Adenylyltransferase

scientific article

Structure and control of the actin regulatory WAVE complex

scientific article

Structure and gating mechanism of the α7 nicotinic acetylcholine receptor

scientific article published on 17 March 2021

Structure of Tracheal Cytotoxin in Complex with a Heterodimeric Pattern-Recognition Receptor

scientific article

Structure of the Type III Secretion Effector Protein ExoU in Complex with Its Chaperone SpcU

scientific article

Structure of the human cohesin inhibitor Wapl

scientific article

Taking a look at the calibration of a CCD detector with a fiber-optic taper

scientific article published on 16 February 2016

The Bear Giant-Skipper genome suggests genetic adaptations to living inside yucca roots

scientific article published on 06 October 2018

The crystal structure of the effector-binding domain of the trehalose repressor TreR from Bacillus subtilis 168 reveals a unique quarternary assembly

scientific article

The first complete genomes of Metalmarks and the classification of butterfly families

scientific article published on 27 July 2017

The many faces of radiation-induced changes

Tiger Swallowtail Genome Reveals Mechanisms for Speciation and Caterpillar Chemical Defense

scientific article published on 12 February 2015

To automate or not to automate: this is the question

scientific article

When COI barcodes deceive: complete genomes reveal introgression in hairstreaks

scientific article published in February 2017

X-ray diffraction experiment--the last experiment in the structure elucidation process

scientific article

List of works by Dominika Borek

A trimethoprim derivative impedes antibiotic resistance evolution

An Intrinsically Disordered Peptide from Ebola Virus VP35 Controls Viral RNA Synthesis by Modulating Nucleoprotein-RNA Interactions

Comparative genome sequencing reveals chemotype-specific gene clusters in the toxigenic black mold Stachybotrys

Complete Genome of Achalarus lyciades, The First Representative of the Eudaminae Subfamily of Skippers

Complete genome of Pieris rapae, a resilient alien, a cabbage pest, and a source of anti-cancer proteins

Complete genomes of Hairstreak butterflies, their speciation, and nucleo-mitochondrial incongruence

Crystal Structure of Cardiac Troponin C Regulatory Domain in Complex with Cadmium and Deoxycholic Acid Reveals Novel Conformation

Crystal packing of plant-type L-asparaginase from Escherichia coli

Crystal structure and putative function of small Toprim domain-containing protein from Bacillus stearothermophilus

Crystal structure of active site mutant of antileukemic L-asparaginase reveals conserved zinc-binding site

Crystal structure of the human NK1 tachykinin receptor

Crystal structure of the human sterol transporter ABCG5/ABCG8.

Crystallization and preliminary X-ray analysis of Ebola VP35 interferon inhibitory domain mutant proteins

Crystallization and preliminary X-ray diffraction analysis of Val57 mutants of the amyloidogenic protein human cystatin C.

Crystallization and preliminary crystallographic studies of a newL-asparaginase encoded by theEscherichia coligenome

Crystallization and preliminary crystallographic studies of five crystal forms of Escherichia coli L-asparaginase II (Asp90Glu mutant).

DENZOandSCALEPACK

Data publication with the structural biology data grid supports live analysis

Development of RNA Aptamers Targeting Ebola Virus VP35

Diffraction data analysis in the presence of radiation damage

Disruption of Wnt/β-Catenin Signaling and Telomeric Shortening Are Inextricable Consequences of Tankyrase Inhibition in Human Cells

Divergent kinase regulates membrane ultrastructure of the parasitophorous vacuole

Ebola virus VP24 targets a unique NLS binding site on karyopherin alpha 5 to selectively compete with nuclear import of phosphorylated STAT1.

Everything Happens at Once – Deconvolving Systematic Effects in X-ray Data Processing

Expression, purification and catalytic activity of Lupinus luteus asparagine beta-amidohydrolase and its Escherichia coli homolog

Extracellular Architecture of the SYG-1/SYG-2 Adhesion Complex Instructs Synaptogenesis

Functional diversification of the NleG effector family in enterohemorrhagic

High-resolution cryo-EM reconstructions in the presence of substantial aberrations

Identification of patterns in diffraction intensities affected by radiation exposure

In Silico Derived Small Molecules Bind the Filovirus VP35 Protein and Inhibit Its Polymerase Cofactor Activity

Marburg virus RNA synthesis is inhibited by a synthetic anti-VP35 antibody

Measurement errors and their consequences in protein crystallography ⬇️

Multiparametric scaling of diffraction intensities

NMR and crystallographic structural studies of the extremely stable monomeric variant of human cystatin C with single amino acid substitution.

Optimal structure determination from sub-optimal diffraction data

Real-space analysis of radiation-induced specific changes with independent component analysis

Skipper genome sheds light on unique phenotypic traits and phylogeny

Speciation in Cloudless Sulphurs Gleaned from Complete Genomes

Structural and Functional Characterization of Reston Ebola Virus VP35 Interferon Inhibitory Domain

Structural basis for CoREST-dependent demethylation of nucleosomes by the human LSD1 histone demethylase

Structural basis for Marburg virus VP35-mediated immune evasion mechanisms

Structural basis for dsRNA recognition and interferon antagonism by Ebola VP35

Structural basis for human respiratory syncytial virus NS1-mediated modulation of host responses.

Structural characterization of V57D and V57P mutants of human cystatin C, an amyloidogenic protein

Structure and Mechanism of a Eukaryotic FMN Adenylyltransferase

Structure and control of the actin regulatory WAVE complex

Structure and gating mechanism of the α7 nicotinic acetylcholine receptor

Structure of Tracheal Cytotoxin in Complex with a Heterodimeric Pattern-Recognition Receptor

Structure of the Type III Secretion Effector Protein ExoU in Complex with Its Chaperone SpcU

Structure of the human cohesin inhibitor Wapl

Taking a look at the calibration of a CCD detector with a fiber-optic taper

The Bear Giant-Skipper genome suggests genetic adaptations to living inside yucca roots

The crystal structure of the effector-binding domain of the trehalose repressor TreR from Bacillus subtilis 168 reveals a unique quarternary assembly

The first complete genomes of Metalmarks and the classification of butterfly families

The many faces of radiation-induced changes

Tiger Swallowtail Genome Reveals Mechanisms for Speciation and Caterpillar Chemical Defense

To automate or not to automate: this is the question

When COI barcodes deceive: complete genomes reveal introgression in hairstreaks

X-ray diffraction experiment--the last experiment in the structure elucidation process