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List of works by Daniel Blankenberg

28-way vertebrate alignment and conservation track in the UCSC Genome Browser

scientific article (publication date: December 2007)

A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly

scientific article

An encyclopedia of mouse DNA elements (Mouse ENCODE).

scientific article

Analysis of nested alternate open reading frames and their encoded proteins

scientific article published in 2022

Analysis of next-generation sequencing data using Galaxy

scientific article

Biology Needs Evolutionary Software Tools: Let's Build Them Right.

scientific article published on 23 April 2018

Child Weight Gain Trajectories Linked To Oral Microbiota Composition

scientific article published in Scientific Reports

CloudMap: a cloud-based pipeline for analysis of mutant genome sequences

scientific article

Community-led, integrated, reproducible multi-omics with anvi'o

scientific article published on 01 January 2021

Controlling for contamination in re-sequencing studies with a reproducible web-based phylogenetic approach

scientific article

Dissemination of scientific software with Galaxy ToolShed

scientific article (publication date: 20 February 2014)

Expanding the Galaxy's reference data

publication published on 29 April 2022

Expanding the Galaxy’s reference data

scientific article

Galaxy External Display Applications: closing a dataflow interoperability loop

scientific article published on 01 February 2020

Galaxy Training: A powerful framework for teaching!

Galaxy: a platform for interactive large-scale genome analysis

scientific article

Galaxy: a web-based genome analysis tool for experimentalists

scientific article

Integrating diverse databases into an unified analysis framework: a Galaxy approach

scientific article (publication date: 2011)

Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace

scientific article published on 18 January 2016

Making whole genome multiple alignments usable for biologists

scientific article (publication date: September 2011)

Manipulation of FASTQ data with Galaxy

scientific article

Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA.

scientific article published on 13 October 2014

No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics

scientific article published on 13 August 2020

Online resources for genomic analysis using high-throughput sequencing

scientific article published on 5 February 2015

PDAUG: a Galaxy based toolset for peptide library analysis, visualization, and machine learning modeling

scientific article published on 28 May 2022

Quantitative sequence-function relationships in proteins based on gene ontology

scientific article

Recommendations for the packaging and containerizing of bioinformatics software

Recommendations for the packaging and containerizing of bioinformatics software

scientific article published on 14 June 2018

SimText: a text mining framework for interactive analysis and visualization of similarities among biomedical entities

scientific article published in 2021

Software engineering for scientific big data analysis

scientific article published on 01 May 2019

Sptlc1 is essential for myeloid differentiation and hematopoietic homeostasis

scientific article published on 01 November 2019

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

scientific article

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.

scientific article published in July 2018

Using Galaxy to perform large-scale interactive data analyses

scientific article

Wrangling Galaxy's reference data

scientific article

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