List of works by Marcos J Araúzo-Bravo

A balanced Oct4 interactome is crucial for maintaining pluripotency

scientific article published on 16 February 2022

A global transcriptome analysis reveals molecular hallmarks of neural stem cell death, survival, and differentiation in response to partial FGF-2 and EGF deprivation

scientific article

A mechanism for the segregation of age in mammalian neural stem cells

scientific article published on September 2015

A novel feeder-free culture system for expansion of mouse spermatogonial stem cells

scientific article

A unique Oct4 interface is crucial for reprogramming to pluripotency

scientific article

ART culture conditions change the probability of mouse embryo gestation through defined cellular and molecular responses.

scientific article published on 26 June 2012

Aberrant methylated key genes of methyl group metabolism within the molecular etiology of urothelial carcinogenesis.

scientific article published on 22 February 2018

An improved method for statistical analysis of metabolic flux analysis using isotopomer mapping matrices with analytical expressions

scientific article published in October 2003

Astrocyte pathology in a human neural stem cell model of frontotemporal dementia caused by mutant TAU protein.

scientific article published on 03 March 2017

Atypical cell populations associated with acquired resistance to cytostatics and cancer stem cell features: the role of mitochondria in nuclear encapsulation

scientific article

Author Correction: Aberrant methylated key genes of methyl group metabolism within the molecular etiology of urothelial carcinogenesis.

scientific article published on 11 April 2018

Autologous pluripotent stem cells generated from adult mouse testicular biopsy

scientific article

Automatic interpretation of magnetic data based on Euler deconvolution with unprescribed structural index

Automatization of a penicillin production process with soft sensors and an adaptive controller based on neuro fuzzy systems

article

Basic Hallmarks of Urothelial Cancer Unleashed in Primary Uroepithelium by Interference with the Epigenetic Master Regulator ODC1

scientific article published on 02 March 2020

BigMPI4py: Python module for parallelization of Big Data objects discloses germ layer specific DNA demethylation motifs

scientific article published on 10 December 2020

Blockage of the Epithelial-to-Mesenchymal Transition Is Required for Embryonic Stem Cell Derivation.

scientific article published on 6 September 2017

Brief report: evaluating the potential of putative pluripotent cells derived from human testis

scientific article

Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages

scientific article

Changing POU dimerization preferences converts Oct6 into a pluripotency inducer

scientific article published on 22 December 2016

Chromatin-Remodeling Components of the BAF Complex Facilitate Reprogramming

scientific article published on June 2010

Comparative transcriptome analysis in induced neural stem cells reveals defined neural cell identities in vitro and after transplantation into the adult rodent brain.

scientific article published on 19 April 2016

Comprehensive human transcription factor binding site map for combinatory binding motifs discovery

scientific article

Computational Biology Methods for Characterization of Pluripotent Cells.

scientific article

Computational analysis of single-cell transcriptomics data elucidates the stabilization of Oct4 expression in the E3.25 mouse preimplantation embryo.

scientific article

Concise review: challenging the pluripotency of human testis-derived ESC-like cells

scientific article published on August 2011

Conversion of adult mouse unipotent germline stem cells into pluripotent stem cells

scientific article published on 22 April 2010

Conversion of genomic imprinting by reprogramming and redifferentiation

scientific article published on 22 March 2013

Correction: Transcription Factor TFAP2C Regulates Major Programs Required for Murine Fetal Germ Cell Maintenance and Haploinsufficiency Predisposes to Teratomas in Male Mice.

scientific article published on 29 August 2013

Counteracting activities of OCT4 and KLF4 during reprogramming to pluripotency

scientific article published on 20 February 2014

DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism

scientific article published on 12 December 2017

Depth and shape estimates from simultaneous inversion of magnetic fields and their gradient components using differential similarity transforms

article

Derivation and maintenance of murine trophoblast stem cells under defined conditions

scientific article published on 30 January 2014

Determination of the parameters of compact ferro-metallic objects with transforms of magnitude magnetic anomalies

article published in 2004

Dimensionality of amino acid space and solvent accessibility prediction with neural networks.

scientific article published on 20 March 2006

Direct Induction of Trophoblast Stem Cells from Murine Fibroblasts

scientific article published on 22 September 2015

Direct Reprogramming of Hepatic Myofibroblasts into Hepatocytes In Vivo Attenuates Liver Fibrosis

scientific article

Direct conversion of mouse fibroblasts into induced neural stem cells

scientific article published on 20 March 2014

Direct reprogramming of fibroblasts into epiblast stem cells

scientific article published on 5 December 2010

Direct reprogramming of fibroblasts into neural stem cells by defined factors

scientific article

Direct reprogramming of human neural stem cells by OCT4.

scientific article

Disclosing the crosstalk among DNA methylation, transcription factors, and histone marks in human pluripotent cells through discovery of DNA methylation motifs

scientific article published on 22 October 2013

Discovery and Proof-of-Concept Study of Nuclease Activity as a Novel Biomarker for Breast Cancer Tumors

scientific article published in 2021

Dissecting the role of distinct OCT4-SOX2 heterodimer configurations in pluripotency.

scientific article published on 28 August 2015

Distinct Signaling Requirements for the Establishment of ESC Pluripotency in Late-Stage EpiSCs

scientific article (publication date: 14 April 2016)

Distinct developmental ground states of epiblast stem cell lines determine different pluripotency features

scientific article

Does mouse embryo primordial germ cell activation start before implantation as suggested by single-cell transcriptomics dynamics?

scientific article published on 5 January 2016

Effect of a pyruvate kinase (pykF-gene) knockout mutation on the control of gene expression and metabolic fluxes in Escherichia coli.

scientific article

Effect of cra gene knockout together with edd and iclR genes knockout on the metabolism in Escherichia coli

scientific article

Efficient derivation of pluripotent stem cells from siRNA-mediated Cdx2-deficient mouse embryos

scientific article

Efficient hematopoietic redifferentiation of induced pluripotent stem cells derived from primitive murine bone marrow cells

scientific article published on 24 August 2011

Epiblast stem cell subpopulations represent mouse embryos of distinct pregastrulation stages.

scientific article published in November 2010

Epigenetic hierarchy governing Nestin expression

scientific article published on May 2009

Erythroid differentiation of human induced pluripotent stem cells is independent of donor cell type of origin.

scientific article

Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency

scientific article published on 14 June 2018

Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency

scientific article published on 01 December 2018

Establishment of feeder-free culture system for human induced pluripotent stem cell on DAS nanocrystalline graphene

scientific article published on 5 February 2016

Estimating the magnetization direction of sources from southeast Bulgaria through correlation between reduced-to-the-pole and total magnitude anomalies

article

Estimation of bidirectional metabolic fluxes from MS and NMR data using positional representations.

scientific article

FGF signalling inhibits neural induction in human embryonic stem cells

scientific article

FLT3 activation cooperates with MLL-AF4 fusion protein to abrogate the hematopoietic specification of human ESCs

scientific article published on 11 March 2013

Functional high-resolution time-course expression analysis of human embryonic stem cells undergoing cardiac induction

scientific article published on 28 September 2016

GAA Deficiency in Pompe Disease Is Alleviated by Exon Inclusion in iPSC-Derived Skeletal Muscle Cells

scientific article

GABA-B1 Receptor-Null Schwann Cells Exhibit Compromised In Vitro Myelination

scientific article published on 12 June 2018

Gene expression of the liver of vaccination-protected mice in response to early patent infections of Plasmodium chabaudi blood-stage malaria.

scientific article published on 29 May 2018

Genealogy of the neurodegenerative diseases based on a meta-analysis of age-stratified incidence data

scientific article published on 03 November 2020

Generation of induced pluripotent stem cells from neural stem cells.

scientific article published on 17 September 2009

Generation of parthenogenetic induced pluripotent stem cells from parthenogenetic neural stem cells.

scientific article published in December 2009

Genome Scale Modeling to Study the Metabolic Competition between Cells in the Tumor Microenvironment

scientific article published in 2021

Genome-wide hypomethylation of LINE-1 and Alu retroelements in cell-free DNA of blood is an epigenetic biomarker of human aging.

scientific article published on 13 February 2018

Germ cell nuclear factor regulates gametogenesis in developing gonads

scientific article

Human adult germline stem cells in question.

scientific article published in June 2010

Human adult white matter progenitor cells are multipotent neuroprogenitors similar to adult hippocampal progenitors

scientific article published on 20 February 2014

Human bone marrow stromal cells lose immunosuppressive and anti-inflammatory properties upon oncogenic transformation

scientific article

Human primordial germ cell commitment in vitro associates with a unique PRDM14 expression profile.

scientific article published on 6 March 2015

Hypoxia induces pluripotency in primordial germ cells by HIF1α stabilization and Oct4 deregulation.

scientific article published on 30 October 2014

Identification and Characterization of the Dermal Panniculus Carnosus Muscle Stem Cells.

scientific article published on September 2016

Identification of genes specific to mouse primordial germ cells through dynamic global gene expression

scientific article published on 11 October 2010

Increased robustness of early embryogenesis through collective decision-making by key transcription factors

scientific article published on 2 June 2015

Indirect readout in drug-DNA recognition: role of sequence-dependent DNA conformation

scientific article published on 26 November 2007

Induction of pluripotency in adult unipotent germline stem cells.

scientific article published in July 2009

Induction of pluripotency in human cord blood unrestricted somatic stem cells

scientific article published on 10 June 2010

Inflammaging and Frailty Status Do Not Result in an Increased Extracellular Vesicle Concentration in Circulation.

scientific article published on 20 July 2016

Inhibition of TGFβ signaling promotes ground state pluripotency

scientific article published in February 2014

Initiation of trophectoderm lineage specification in mouse embryos is independent of Cdx2.

scientific article

Isolation of novel multipotent neural crest-derived stem cells from adult human inferior turbinate

scientific article published on 26 January 2012

Knowledge-based prediction of DNA atomic structure from nucleic sequence.

scientific article published in January 2005

MaGSoundDST — 3D automatic inversion of magnetic and gravity data based on the differential similarity transform

scholarly article

Metabolic control of adult neural stem cell activity by Fasn-dependent lipogenesis

scientific article published on 2 December 2012

Metabolic flux analysis for a ppc mutant Escherichia coli based on 13C-labelling experiments together with enzyme activity assays and intracellular metabolite measurements.

scientific article

MicroRNA-199a-5p inhibition enhances the liver repopulation ability of human embryonic stem cell-derived hepatic cells.

scientific article published on 15 August 2014

Modular architecture of protein structures and allosteric communications: potential implications for signaling proteins and regulatory linkages

scientific article published in January 2007

Nanog induces hyperplasia without initiating tumors.

scientific article published on 10 August 2014

NaviSE: superenhancer navigator integrating epigenomics signal algebra.

scientific article

Neural induction intermediates exhibit distinct roles of Fgf signaling.

scientific article published in October 2010

Observing and Manipulating Pluripotency in Normal and Cloned Mouse Embryos

Oct4-induced oligodendrocyte progenitor cells enhance functional recovery in spinal cord injury model

scientific article

Oct4-induced pluripotency in adult neural stem cells.

scientific article

Origin-dependent neural cell identities in differentiated human iPSCs in vitro and after transplantation into the mouse brain.

scientific article

P3BSseq: parallel processing pipeline software for automatic analysis of bisulfite sequencing data.

scientific article

PR-LncRNA signature regulates glioma cell activity through expression of SOX factors

scientific article published in Scientific Reports

Perivascular Mesenchymal Stem Cells From the Adult Human Brain Harbor No Instrinsic Neuroectodermal but High Mesodermal Differentiation Potential

scientific article

Permissive epigenomes endow reprogramming competence to transcriptional regulators

scientific article published on 17 August 2020

Pluripotent stem cells induced from adult neural stem cells by reprogramming with two factors

scientific article

Protective Vaccination Reshapes Hepatic Response to Blood-Stage Malaria of Genes Preferentially Expressed by NK Cells

scientific article published on 13 November 2020

RNA-sequencing from single nuclei

scientific article

ReXSpecies--a tool for the analysis of the evolution of gene regulation across species

scientific article (publication date: 14 April 2008)

Reactivation of the inactive X chromosome and post-transcriptional reprogramming of Xist in iPSCs.

scientific article published on 6 November 2014

ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition

scientific article published on July 2006

Reprogramming competence of OCT factors is determined by transactivation domains

scientific article published on 02 September 2020

Reprogramming of two somatic nuclei in the same ooplasm leads to pluripotent embryonic stem cells

scientific article published in November 2013

Reprogramming to pluripotency is an ancient trait of vertebrate Oct4 and Pou2 proteins

scientific article published on January 2012

Reprogramming to pluripotency through a somatic stem cell intermediate

scientific article

Revised roles of ISL1 in a hES cell-based model of human heart chamber specification.

scientific article published on 16 January 2018

Rules governing the mechanism of epigenetic reprogramming memory

scientific article published on 16 January 2018

SOX9 Elevation Acts with Canonical WNT Signaling to Drive Gastric Cancer Progression.

scientific article published on 28 August 2016

SOX9 promotes tumor progression through the axis BMI1-p21CIP

scientific article published on 15 January 2020

Senescence plays a role in Myotonic Dystrophy type 1

scientific article published in 2022

Sequence-Dependent Conformational Energy of DNA Derived from Molecular Dynamics Simulations: Toward Understanding the Indirect Readout Mechanism in Protein−DNA Recognition

article

Sequentially induced motor neurons from human fibroblasts facilitate locomotor recovery in a rodent spinal cord injury model

scientific article published on 23 June 2020

Somatic cell nuclear reprogramming of mouse oocytes endures beyond reproductive decline.

scientific article published on 7 December 2010

Sox2 Level Is a Determinant of Cellular Reprogramming Potential

scientific article

Stepwise Clearance of Repressive Roadblocks Drives Cardiac Induction in Human ESCs

scientific article published on 01 April 2016

Stepwise Clearance of Repressive Roadblocks Drives Cardiac Induction in Human ESCs.

scientific article published on 29 December 2015

Targeting liver sinusoidal endothelial cells with miR-20a-loaded nanoparticles reduces murine colon cancer metastasis to the liver.

scientific article published on 28 February 2018

Therapeutic relevance of SOX9 stem cell factor in gastric cancer

scientific article published on 20 December 2018

Three-dimensional interpretation of magnetic and gravity anomalies using the finite-difference similarity transform

scholarly article

Transcription factor TFAP2C regulates major programs required for murine fetal germ cell maintenance and haploinsufficiency predisposes to teratomas in male mice

scientific article

Universal cardiac induction of human pluripotent stem cells in two and three-dimensional formats: implications for in vitro maturation.

scientific article published on May 2015

Unreserved application of epigenetic methods to define differences of DNA methylation between urinary cellular and cell-free DNA

scientific article published on 01 January 2014

Unrestricted somatic stem cells (USSC) from human umbilical cord blood display uncommitted epigenetic signatures of the major stem cell pluripotency genes.

scientific article published on 27 August 2010

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