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List of works by Thomas D Kocher

A BAC-based physical map of the Nile tilapia genome.

scientific article

A Tandem Duplicate of Anti-Müllerian Hormone with a Missense SNP on the Y Chromosome Is Essential for Male Sex Determination in Nile Tilapia, Oreochromis niloticus

scientific article published on 20 November 2015

A deleterious effect associated with UNH159 is attenuated in twin embryos of an inbred line of blue tilapia Oreochromis aureus

scientific article published on 26 November 2012

A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus).

scientific article

A high quality assembly of the Nile Tilapia (Oreochromis niloticus) genome reveals the structure of two sex determination regions

scientific article

A high-resolution map of the Nile tilapia genome: a resource for studying cichlids and other percomorphs

scientific article

A newantennapedia-class gene from the zebrafish ⬇️

scientific article published on October 11, 1991

A reappraisal of the systematics of the monocelididae (Platyhelminthes, Proseriata): inferences from rDNA sequences

scientific article published in August 1996

A second-generation genetic linkage map of tilapia (Oreochromis spp.).

scientific article

A small number of genes underlie male pigmentation traits in Lake Malawi cichlid fishes

scientific article published in May 2012

Adaptive evolution and explosive speciation: the cichlid fish model

scientific article (publication date: April 2004)

Adaptive molecular evolution in the opsin genes of rapidly speciating cichlid species

scientific article

African fishes

scientific article published in Nature

Amh and Dmrta2 genes map to tilapia (Oreochromis spp.) linkage group 23 within quantitative trait locus regions for sex determination.

scientific article

An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags

scientific article

An allelic series at pax7a is associated with colour polymorphism diversity in Lake Malawi cichlid fish

scientific article published on 27 December 2016

An improved genome reference for the African cichlid, Metriaclima zebra.

scientific article published on 22 September 2015

Ancient sex-specific extension of the cytochrome c oxidase II gene in bivalves and the fidelity of doubly-uniparental inheritance

scientific article published in August 2002

Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research.

scientific article published on 20 February 2017

Axes of differentiation in the bower-building cichlids of Lake Malawi

scientific article

Caenorhabditis elegans contains genes encoding two new members of the Zn-containing alcohol dehydrogenase family.

scientific article published on July 1995

Changing sex for selfish gain: B chromosomes of Lake Malawi cichlid fish

scientific article published on 27 December 2019

Chromosome differentiation patterns during cichlid fish evolution

scientific article (publication date: 15 June 2010)

Chromosome differentiation patterns during cichlid fish evolution. ⬇️

scientific article published on 19 January 2012

Chromosome evolution in African cichlid fish: contributions from the physical mapping of repeated DNAs.

scientific article

Chromosome-level genome assembly of a cyprinid fish Onychostoma macrolepis by integration of Nanopore Sequencing, Bionano and Hi-C technology

scientific article published on 17 May 2020

Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes

scientific article published on 01 April 2019

Circular DNA intermediate in the duplication of Nile tilapia vasa genes

scientific article

Comparative analysis of a sex chromosome from the blackchin tilapia, Sarotherodon melanotheron.

scientific article

Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids

scientific article published on 10 July 2008

Comparative cytogenetic mapping of Sox2 and Sox14 in cichlid fishes and inferences on the genomic organization of both genes in vertebrates

scientific article (publication date: July 2011)

Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus)

scientific article

Comparison of mitochondrial DNA sequences of seven morphospecies of black flies (Diptera: Simuliidae).

scientific article published in April 1991

Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: early establishment of the vertebrate genome organization

scientific article

Cone opsin genes of african cichlid fishes: tuning spectral sensitivity by differential gene expression.

scientific article published in August 2001

Construction of bacterial artificial chromosome libraries for the Lake Malawi cichlid (Metriaclima zebra), and the blind cavefish (Astyanax mexicanus).

scientific article

Craniofacial divergence and ongoing adaptation via the hedgehog pathway

scientific article

DNA sequence variation of mitochondrial large-subunit rRNA provides support for a two-subclass organization of the Anthozoa (Cnidaria).

scientific article

DNA sequencing of formalin-fixed crustaceans from archival research collections.

scientific article published on December 1996

Defense of Heterospecific Cichlids by Cyrtocara moorii in Lake Malawi, Africa

scientific article published on 6 May 1983

Directional selection has shaped the oral jaws of Lake Malawi cichlid fishes

scientific article

Discriminating between Ixodes ticks by means of mitochondrial DNA sequences.

scientific article published in December 1995

Distribution of the Ixodes ricinus-like ticks of eastern North America

scientific article

Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses

scientific article published on 07 August 2019

Divergence with gene flow in the rock-dwelling cichlids of Lake Malawi

scientific article published in October 2000

Diversity of Sex Chromosomes in Vertebrates: Six Novel Sex Chromosomes in Basal Haplochromines (Teleostei: Cichlidae)

scientific article published in July 2024

Dynamic Sequence Evolution of a Sex-Associated B Chromosome in Lake Malawi Cichlid Fish

scientific article published on 14 September 2016

Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers

scientific article (publication date: August 1989)

Ecomorphological divergence and habitat lability in the context of robust patterns of modularity in the cichlid feeding apparatus

scientific article published on 31 July 2020

Erratum to: Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research.

scientific article published on 16 March 2017

Evidence for sympatric speciation?

scientific article published in Nature

Evidence of Hybridization between Cynotilapia afra and Pseudotropheus zebra (Teleostei: Cichlidae) Following an Intralacustrine Translocation in Lake Malaŵi

scientific article published on 2 February 1996

Evolution of NADH dehydrogenase subunit 2 in east African cichlid fish.

scientific article published in December 1995

Evolution of a unique mitotype-specific protein-coding extension of the cytochrome c oxidase II gene in freshwater mussels (Bivalvia: Unionoida)

scientific article published on 28 July 2005

Evolution of the cytochrome b gene of mammals

scientific article (publication date: February 1991)

Evolutionary biology: ghost of speciation past.

scientific article published in May 2005

Exclusion of Wilms tumour (WT1b) and ovarian cytochrome P450 aromatase (CYP19A1) as candidates for sex determination genes in Nile tilapia (Oreochromis niloticus)

scientific article published on 01 February 2007

FURTHER GENETIC ANALYSES OF A HYBRID ZONE BETWEEN LEOPARD FROGS (RANA PIPIENS COMPLEX) IN CENTRAL TEXAS.

scientific article

Fractious phylogenies

scientific article published in Nature

From phenotype to genotype.

scientific article

Further Genetic Analyses of a Hybrid Zone Between Leopard Frogs (Rana pipiens Complex) in Central Texas

scientific article published in 1986

Genetic and developmental basis of cichlid trophic diversity.

scientific article published on 12 July 2006

Genetic and physical mapping of sex-linked AFLP markers in Nile tilapia (Oreochromis niloticus).

scientific article

Genetic architecture sets limits on transgressive segregation in hybrid cichlid fishes

scientific article published on 01 March 2005

Genetic basis of adaptive shape differences in the cichlid head.

scientific article published in July 2003

Genetic structure of harbour porpoise Phocoena phocoena populations in the northwest Atlantic based on mitochondrial and nuclear markers

scientific article published on 01 December 1999

Genetics of sex determination in tilapiine species.

scientific article

Genome mapping of the orange blotch colour pattern in cichlid fishes.

scientific article

Genomic Characterization of a B Chromosome in Lake Malawi Cichlid Fishes

article

Head ramming behaviour by three paedophagous cichlids in Lake Malawi, Africa

article

Homozygous mutation of foxh1 arrests oogenesis causing infertility in female Nile tilapia†

scientific article published on 01 March 2020

Hybridization and contemporary evolution in an introduced cichlid fish from Lake Malawi National Park

scientific article

Identification of a sex-determining region in Nile tilapia (Oreochromis niloticus) using bulked segregant analysis

scientific article published on 01 October 2003

Identification of repetitive elements in the genome of Oreochromis niloticus: tilapia repeat masker.

scientific article

Integrated analysis of miRNA and mRNA expression profiles in tilapia gonads at an early stage of sex differentiation

scientific article

Integrated cytogenetics and genomics analysis of transposable elements in the Nile tilapia, Oreochromis niloticus

scientific article

Integrating cytogenetics and genomics in comparative evolutionary studies of cichlid fish

scientific article

Integration and evolution of the cichlid mandible: the molecular basis of alternate feeding strategies.

scientific article

Intra- and interspecific mitochondrial DNA sequence variation within two species of rock-dwelling cichlids (Teleostei: Cichlidae) from Lake Malawi, Africa

scientific article published in December 1994

Intra- and interspecific mitochondrial DNA sequence variation within two species of rock-dwelling cichlids (Teleostei: Cichlidae) from Lake Malawi, Africa.

scientific article published in March 1994

Lineage-specific expansion of vomeronasal type 2 receptor-like (OlfC) genes in cichlids may contribute to diversification of amino acid detection systems

scientific article

Linkage mapping of major histocompatibility complex class I loci in tilapia (Oreochromis spp.).

scientific article published on 01 October 2003

Loss of Cyp11c1 causes delayed spermatogenesis due to the absence of 11-ketotestosterone

scientific article published on 01 March 2020

Mapping of pigmentation QTL on an anchored genome assembly of the cichlid fish, Metriaclima zebra.

scientific article

Mapping the transferrin gene in tilapia

scientific article published on 01 February 2002

Microsatellite mapping of the prolactin locus in the tilapia genome

scientific article published on 01 February 1998

Microsatellite variation associated with prolactin expression and growth of salt-challenged tilapia

scientific article published on 01 January 2002

Mitochondrial DNA sequences in single hairs from a southern African population

scientific article

Mitochondrial DNA: molecular fossils in the nucleus.

scientific article published on February 1996

Mitogenomics: digging deeper with complete mitochondrial genomes

scientific article published in October 1999

Molecular Systematics of Fishes

scientific article published in May 1998

Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial DNA sequences

scientific article published on October 1990

Movement of transposable elements contributes to cichlid diversity

scientific article published on 13 October 2020

Multiple interacting loci control sex determination in lake Malawi cichlid fish

scientific article

Network architecture and sex chromosome turnovers: Do epistatic interactions shape patterns of sex chromosome replacement?

scientific article published on 07 December 2020

New Sex Chromosomes in Lake Victoria Cichlid Fishes (Cichlidae: Haplochromini) ⬇️

scientific article published on 30 April 2022

Novel sex chromosomes in three cichlid fishes from Lake Tanganyika.

scientific article published on 10 February 2018

Origin and evolution of B chromosomes in the cichlid fish Astatotilapia latifasciata based on integrated genomic analyses.

scientific article published on 26 April 2014

Origin of a giant sex chromosome

scientific article published on 10 December 2020

Origins of shared genetic variation in African cichlids

scientific article published on 28 December 2012

PCR, direct sequencing, and the comparative approach

scientific article published on May 1, 1992

PHYLOGENETIC RELATIONSHIPS OF NORTH AMERICAN URSIDS BASED ON ANALYSIS OF MITOCHONDRIAL DNA.

scientific article published in February 1991

Pathways of lysozyme evolution inferred from the sequences of cytochrome b in birds

scientific article published on October 1993

Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes

scientific article (publication date: September 1995)

Phylogenetic Relationships of North American Ursids Based on Analysis of Mitochondrial DNA

article

Phylogeny of a rapidly evolving clade: the cichlid fishes of Lake Malawi, East Africa

scientific article

Phylogeny of sibling species of Simulium venustum and S. verecundum (Diptera: Simuliidae) based on sequences of the mitochondrial 16S rRNA gene.

scientific article published on December 1993

Polymorphism of Sex Determination Amongst Wild Populations Suggests its Rapid Turnover Within the Nile Tilapia Species

scientific article published on 17 May 2022

Population structure and colour variation of the cichlid fishes Labeotropheus fuelleborni Ahl along a recently formed archipelago of rocky habitat patches in southern Lake Malawi

scientific article published in 1999

Rapid isolation of CA microsatellites from the tilapia genome.

scientific article

Rose-colored goggles

scientific article published on 01 February 2003

Selective sweeps in the human genome: a starting point for identifying genetic differences between modern humans and chimpanzees

scientific article published in December 2002

Sequence variation in the outer-surface-protein genes of Borrelia burgdorferi

scientific article published in January 1994

Sequencing of polymerase chain reaction-amplified DNAs.

scientific article

Sex-linked markers and microsatellite locus duplication in the cichlid species Oreochromis tanganicae

scientific article published on December 2008

Sexual conflict resolved by invasion of a novel sex determiner in Lake Malawi cichlid fishes ⬇️

scientific article

Similar morphologies of cichlid fish in Lakes Tanganyika and Malawi are due to convergence

scientific article published on June 1993

Source regions for recruitment of Calanus finmarchicus to Georges Bank: evidence from molecular population genetic analysis of mtDNA

article

Special feature--roundtable discussion. Fish models for studying adaptive evolution and speciation

scientific article

Speciation in rapidly diverging systems: lessons from Lake Malawi

scientific article

Structure and Sequence of the Sex Determining Locus in Two Wild Populations of Nile Tilapia

scientific article published on 29 August 2020

Structure and decay of a proto-Y region in Tilapia, Oreochromis niloticus

scientific article

Structure and evolution of teleost mitochondrial control regions

scientific article

Systematic Status and Distribution of Ambystoma tigrinum stebbinsi Lowe (Amphibia: Caudata)

scientific article published on 3 August 1988

The cusp of evolution and development: a model of cichlid tooth shape diversity

scientific article published in November 2003

The genomic substrate for adaptive radiation in African cichlid fish

scientific article

The joy of systematics

scientific article published in Nature

Tol2-mediated transgenesis in tilapia (Oreochromis niloticus).

scientific article

Toward a more accurate time scale for the human mitochondrial DNA tree.

scientific article published in October 1993

Transcriptome display during tilapia sex determination and differentiation as revealed by RNA-Seq analysis.

scientific article published on 15 May 2018

Two unlinked loci controlling the sex of blue tilapia (Oreochromis aureus).

scientific article published in June 2004

Understanding Student Perceptions and Practices for Pre-Lecture Content Reading in the Genetics Classroom

article

Unusual Diversity of Sex Chromosomes in African Cichlid Fishes

article

Visual adaptation could aid sympatric speciation in a deep crater lake

scientific article published on 20 November 2019

Visual pigments of African cichlid fishes: evidence for ultraviolet vision from microspectrophotometry and DNA sequences

scientific article

Whose larvae?

scientific article published in Nature

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