List of works - Ion I. Mandoiu

Area under the curve as a tool to measure kinetics of tumor growth in experimental animals

scientific article

Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates

scientific article

Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling

scientific article published on 29 October 2014

Correction: Neuraminidase Subtyping of Avian Influenza Viruses with PrimerHunter-Designed Primers and Quadruplicate Primer Pools.

scientific article

DNA-BAR: distinguisher selection for DNA barcoding.

scientific article published on 16 June 2005

Dosage Compensation and Gene Expression of the X Chromosome in Sheep

article

Effects of maternal nutrition on the expression of genomic imprinted genes in ovine fetuses

article

Estimation of alternative splicing isoform frequencies from RNA-Seq data ⬇️

scientific article

Exact and approximation algorithms for DNA tag set design

scientific article published in April 2006

Feature selection and classifier performance on diverse bio- logical datasets

scientific article

Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity

scientific article

Genotype error detection using Hidden Markov Models of haplotype diversity.

scientific article published in November 2008

Guest Editors' introduction to the special section on bioinformatics research and applications

scientific article published on 01 October 2010

Guest editors' introduction to the special section on bioinformatics research and applications

scientific article published in July 2008

Guest editors' introduction to the special section on bioinformatics research and applications.

scientific article published in November 2013

Guest editors' introduction.

scientific article

High-throughput SNP genotyping by SBE/SBH.

scientific article published in March 2007

Highly Scalable Genotype Phasing by Entropy Minimization

scientific article published on 01 January 2006

Highly scalable algorithms for robust string barcoding

scientific article published in January 2005

Highly scalable genotype phasing by entropy minimization.

scientific article

ILP-based maximum likelihood genome scaffolding

scientific article

Identification of mammalian orthologs using local synteny

scientific article

Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations.

scientific article published in January 2011

In silico enzymatic synthesis of a 400,000 compound biochemical database for nontargeted metabolomics

scientific article (publication date: 23 September 2013)

Inferring ethnicity from mitochondrial DNA sequence. ⬇️

scientific article

Inferring viral quasispecies spectra from 454 pyrosequencing reads.

scientific article

Mass spectrometry driven exploration reveals nuances of neoepitope-driven tumor rejection

scientific article published on 20 June 2019

Messages from the Chairs

Minor splicing snRNAs are enriched in the developing mouse CNS and are crucial for survival of differentiating retinal neurons.

scientific article published on 10 December 2014

PrimerHunter: a primer design tool for PCR-based virus subtype identification.

scientific article published on 05 March 2009

Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows

scientific article

Replication-dependent histone genes are actively transcribed in differentiating and aging retinal neurons

scientific article

Reversion analysis reveals the in vivo immunogenicity of a poorly MHC I-binding cancer neoepitope

scientific article published on 05 November 2021

Scalable heuristics for design of DNA probe arrays.

scientific article

Sympathetic nervous tone limits the development of myeloid-derived suppressor cells

scientific article published on 01 September 2020

TNet: Transmission Network Inference Using Within-Host Strain Diversity and its Application to Geographical Tracking of COVID-19 Spread

scientific article published on 13 July 2021

TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads

scholarly article by Serghei Mangul et al published 2012 in BMC Bioinformatics

The birth of new genes by RNA- and DNA-mediated duplication during mammalian evolution

scientific article published on 01 October 2009

The use of graph matching algorithms to identify biochemical substructures in synthetic chemical compounds: Application to metabolomics

scientific article

List of works by Ion I. Mandoiu

Area under the curve as a tool to measure kinetics of tumor growth in experimental animals

Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates

Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling

Correction: Neuraminidase Subtyping of Avian Influenza Viruses with PrimerHunter-Designed Primers and Quadruplicate Primer Pools.

DNA-BAR: distinguisher selection for DNA barcoding.

Dosage Compensation and Gene Expression of the X Chromosome in Sheep

Effects of maternal nutrition on the expression of genomic imprinted genes in ovine fetuses

Estimation of alternative splicing isoform frequencies from RNA-Seq data ⬇️

Exact and approximation algorithms for DNA tag set design

Feature selection and classifier performance on diverse bio- logical datasets

Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity

Genotype error detection using Hidden Markov Models of haplotype diversity.

Guest Editors' introduction to the special section on bioinformatics research and applications

Guest editors' introduction to the special section on bioinformatics research and applications

Guest editors' introduction to the special section on bioinformatics research and applications.

Guest editors' introduction.

High-throughput SNP genotyping by SBE/SBH.

Highly Scalable Genotype Phasing by Entropy Minimization

Highly scalable algorithms for robust string barcoding

Highly scalable genotype phasing by entropy minimization.

ILP-based maximum likelihood genome scaffolding

Identification of mammalian orthologs using local synteny

Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations.

In silico enzymatic synthesis of a 400,000 compound biochemical database for nontargeted metabolomics

Inferring ethnicity from mitochondrial DNA sequence. ⬇️

Inferring viral quasispecies spectra from 454 pyrosequencing reads.

Mass spectrometry driven exploration reveals nuances of neoepitope-driven tumor rejection

Messages from the Chairs

Minor splicing snRNAs are enriched in the developing mouse CNS and are crucial for survival of differentiating retinal neurons.

PrimerHunter: a primer design tool for PCR-based virus subtype identification.

Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows

Replication-dependent histone genes are actively transcribed in differentiating and aging retinal neurons

Reversion analysis reveals the in vivo immunogenicity of a poorly MHC I-binding cancer neoepitope

Scalable heuristics for design of DNA probe arrays.

Sympathetic nervous tone limits the development of myeloid-derived suppressor cells

TNet: Transmission Network Inference Using Within-Host Strain Diversity and its Application to Geographical Tracking of COVID-19 Spread

TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads

The birth of new genes by RNA- and DNA-mediated duplication during mammalian evolution

The use of graph matching algorithms to identify biochemical substructures in synthetic chemical compounds: Application to metabolomics