List of works - Eileen E. M. Furlong

4DXpress: a database for cross-species expression pattern comparisons

scientific article published on 04 October 2007

<i>Cis</i>-acting variation is common across regulatory layers but is often buffered during embryonic development

scientific article published on 11 December 2020

A Temporal Map of Transcription Factor Activity: Mef2 Directly Regulates Target Genes at All Stages of Muscle Development

scientific article (publication date: June 2006)

A Versatile, Low-Cost, Multiway Microfluidic Sorter for Droplets, Cells, and Embryos

scientific article published on 24 April 2018

A conserved role for Snail as a potentiator of active transcription

scientific article published on 8 January 2014

A core transcriptional network for early mesoderm development in Drosophila melanogaster

scientific article published on February 2007

A functional genomics approach to identify new regulators of Wnt signaling

scientific article published in May 2005

A proteolytic fragment of histone deacetylase 4 protects the heart from failure by regulating the hexosamine biosynthetic pathway.

scientific article published on 11 December 2017

A systematic analysis of Tinman function reveals Eya and JAK-STAT signaling as essential regulators of muscle development

scientific article published in February 2009

A topographical map of spatiotemporal patterns of gene expression

scientific article published in May 2008

A transcription factor collective defines cardiac cell fate and reflects lineage history

scientific article

Adaptation and Implementation of a Mobile Phone-Based Remote Symptom Monitoring System for People With Cancer in Europe

scientific article published on 14 March 2019

Advanced nursing practice: policy, education and role development

scientific article

Analysis of variation at transcription factor binding sites in Drosophila and humans

scientific article published in 2012

Analyzing transcription factor occupancy during embryo development using ChIP-seq.

scientific article

Automated sorting of live transgenic embryos

scientific article published in February 2001

BRD4 bimodal binding at promoters and drug-induced displacement at Pol II pause sites associates with I-BET sensitivity

scientific article published on 02 July 2019

Cell type-specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP.

scientific article

ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos

scientific article published in January 2006

Challenges for modeling global gene regulatory networks during development: insights from Drosophila.

scientific article published on 27 October 2009

Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila.

scientific article

Chromatin topology, condensates and gene regulation: shifting paradigms or just a phase?

scientific article published on 25 September 2019

Chromosome topology guides the Drosophila Dosage Compensation Complex for target gene activation.

scientific article

CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data

scientific article

Combinatorial binding leads to diverse regulatory responses: Lmd is a tissue-specific modulator of Mef2 activity

scientific article

Combinatorial binding predicts spatio-temporal cis-regulatory activity

scientific article

Conservation and divergence in developmental networks: a view from Drosophila myogenesis

scientific article

Conservation of transcription factor binding specificities across 600 million years of bilateria evolution

scientific article

Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis

scientific article published on July 2014

Correlation Does Not Imply Causation: Histone Methyltransferases, but Not Histone Methylation, SET the Stage for Enhancer Activation

scientific article published in May 2017

Creation of a minimal tiling path of genomic clones for Drosophila: provision of a common resource

scientific article

Developmental control of nuclear size and shape by Kugelkern and Kurzkern.

scientific article published on 2 February 2006

Developmental enhancers and chromosome topology

scientific article published on 01 September 2018

Divergence in cis-regulatory networks: taking the 'species' out of cross-species analysis

scientific article

Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements

scientific article published on 5 April 2017

Dynamic CRM occupancy reflects a temporal map of developmental progression

scientific article published on June 2010

Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila

scientific article published on 6 November 2008

Dynamix: Dynamic visualization by automatic selection of informative tracks from hundreds of genomic data sets.

scientific article

Enhanced function annotations for Drosophila serine proteases: A case study for systematic annotation of multi-member gene families

scientific article (publication date: 2008)

Enhancer loops appear stable during development and are associated with paused polymerase

scientific article published on 2 July 2014

Erratum: Corrigendum: Enhancer loops appear stable during development and are associated with paused polymerase

scientific article published in Nature

Expanding the mesodermal transcriptional network by genome-wide identification of Zinc finger homeodomain 1 (Zfh1) targets

scientific article published on 29 May 2019

FourCSeq: analysis of 4C sequencing data

scientific article

Fragmentation of DNA in a sub-microliter microfluidic sonication device

scientific article

Gene expression during the life cycle of Drosophila melanogaster

scientific article published in September 2002

Genetic variants regulating expression levels and isoform diversity during embryogenesis

scientific article published on 26 December 2016

Genomics and development: Taking developmental biology to new heights

scientific article published in October 2006

Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression

scientific article published on 15 July 2019

Identification and in silico modeling of enhancers reveals new features of the cardiac differentiation network.

scientific article published on December 2016

Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis

scientific article (publication date: 16 January 2007)

Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing

scientific article published on 6 December 2012

Integrating transcriptional and signalling networks during muscle development.

scientific article published in August 2004

Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers

scientific article

Logical modelling of Drosophila signalling pathways

scientific article published in September 2013

Mes2, a MADF-containing transcription factor essential for Drosophila development

scientific article published in December 2006

Model-based method for transcription factor target identification with limited data.

scientific article

Molecular biology: A fly in the face of genomics

scientific article

Myofilin, a protein in the thick filaments of insect muscle

scientific article published on 15 March 2005

Next-generation sequencing-based detection of germline L1-mediated transductions

scientific article

Non-coding RNA Expression, Function, and Variation during Drosophila Embryogenesis

Notch and Ras signaling pathway effector genes expressed in fusion competent and founder cells during Drosophila myogenesis

scientific article published on 5 November 2003

Oncology nursing students' views of a modified OSCE.

scientific article published on 18 July 2005

Opbp is a new architectural/insulator protein required for ribosomal gene expression.

scientific article published on 25 September 2017

Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state

scientific article

Predictive features of gene expression variation reveal mechanistic link with differential expression

scientific article published on 01 August 2020

Proceedings of Patient Reported Outcome Measure's (PROMs) Conference Oxford 2017: Advances in Patient Reported Outcomes Research : Oxford, UK. 8th June 2017

Promoter shape varies across populations and affects promoter evolution and expression noise

scientific article published on 13 February 2017

Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes

scientific article

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks

scientific article published on 9 December 2015

Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity

scientific article

Temporal ChIP-on-chip reveals Biniou as a universal regulator of the visceral muscle transcriptional network

scientific article published on October 2007

The Insulator Protein CTCF Is Required for Correct Hox Gene Expression, but Not for Embryonic Development in Drosophila

scientific article published on 18 July 2018

The assessment and management of chemotherapy-related toxicities in patients with breast cancer, colorectal cancer, and Hodgkin's and non-Hodgkin's lymphomas: A scoping review

scientific article published on 22 December 2016

The cis-regulatory dynamics of embryonic development at single-cell resolution

scientific article published on 14 March 2018

The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription

scientific article

The eSMART study protocol: a randomised controlled trial to evaluate electronic symptom management using the advanced symptom management system (ASyMS) remote technology for patients with cancer.

scientific article published on 6 June 2017

The importance of being specified: cell fate decisions and their role in cell biology.

scientific article published on November 2010

The road ahead in genetics and genomics

scientific article published on 24 August 2020

The role of chromatin accessibility in cis-regulatory evolution

The role of transcription in shaping the spatial organization of the genome

scientific article published on 01 June 2019

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

scientific article published on 8 January 2012

Transcription factors: from enhancer binding to developmental control

scientific article published on 07 August 2012

Ultrasensitive proteome analysis using paramagnetic bead technology

scientific article

Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity

scientific article

cis-Regulatory networks during development: a view of Drosophila.

scientific article published on 16 October 2008

easyRNASeq: a bioconductor package for processing RNA-Seq data

scientific article

List of works by Eileen E. M. Furlong

4DXpress: a database for cross-species expression pattern comparisons

<i>Cis</i>-acting variation is common across regulatory layers but is often buffered during embryonic development

A Temporal Map of Transcription Factor Activity: Mef2 Directly Regulates Target Genes at All Stages of Muscle Development

A Versatile, Low-Cost, Multiway Microfluidic Sorter for Droplets, Cells, and Embryos

A conserved role for Snail as a potentiator of active transcription

A core transcriptional network for early mesoderm development in Drosophila melanogaster

A functional genomics approach to identify new regulators of Wnt signaling

A proteolytic fragment of histone deacetylase 4 protects the heart from failure by regulating the hexosamine biosynthetic pathway.

A systematic analysis of Tinman function reveals Eya and JAK-STAT signaling as essential regulators of muscle development

A topographical map of spatiotemporal patterns of gene expression

A transcription factor collective defines cardiac cell fate and reflects lineage history

Adaptation and Implementation of a Mobile Phone-Based Remote Symptom Monitoring System for People With Cancer in Europe

Advanced nursing practice: policy, education and role development

Analysis of variation at transcription factor binding sites in Drosophila and humans

Analyzing transcription factor occupancy during embryo development using ChIP-seq.

Automated sorting of live transgenic embryos

BRD4 bimodal binding at promoters and drug-induced displacement at Pol II pause sites associates with I-BET sensitivity

Cell type-specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP.

ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos

Challenges for modeling global gene regulatory networks during development: insights from Drosophila.

Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila.

Chromatin topology, condensates and gene regulation: shifting paradigms or just a phase?

Chromosome topology guides the Drosophila Dosage Compensation Complex for target gene activation.

CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data

Combinatorial binding leads to diverse regulatory responses: Lmd is a tissue-specific modulator of Mef2 activity

Combinatorial binding predicts spatio-temporal cis-regulatory activity

Conservation and divergence in developmental networks: a view from Drosophila myogenesis

Conservation of transcription factor binding specificities across 600 million years of bilateria evolution

Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis

Correlation Does Not Imply Causation: Histone Methyltransferases, but Not Histone Methylation, SET the Stage for Enhancer Activation

Creation of a minimal tiling path of genomic clones for Drosophila: provision of a common resource

Developmental control of nuclear size and shape by Kugelkern and Kurzkern.

Developmental enhancers and chromosome topology

Divergence in cis-regulatory networks: taking the 'species' out of cross-species analysis

Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements

Dynamic CRM occupancy reflects a temporal map of developmental progression

Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila

Dynamix: Dynamic visualization by automatic selection of informative tracks from hundreds of genomic data sets.

Enhanced function annotations for Drosophila serine proteases: A case study for systematic annotation of multi-member gene families

Enhancer loops appear stable during development and are associated with paused polymerase

Erratum: Corrigendum: Enhancer loops appear stable during development and are associated with paused polymerase

Expanding the mesodermal transcriptional network by genome-wide identification of Zinc finger homeodomain 1 (Zfh1) targets

FourCSeq: analysis of 4C sequencing data

Fragmentation of DNA in a sub-microliter microfluidic sonication device

Gene expression during the life cycle of Drosophila melanogaster

Genetic variants regulating expression levels and isoform diversity during embryogenesis

Genomics and development: Taking developmental biology to new heights

Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression

Identification and in silico modeling of enhancers reveals new features of the cardiac differentiation network.

Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis

Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing

Integrating transcriptional and signalling networks during muscle development.

Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers

Logical modelling of Drosophila signalling pathways

Mes2, a MADF-containing transcription factor essential for Drosophila development

Model-based method for transcription factor target identification with limited data.

Molecular biology: A fly in the face of genomics

Myofilin, a protein in the thick filaments of insect muscle

Next-generation sequencing-based detection of germline L1-mediated transductions

Non-coding RNA Expression, Function, and Variation during Drosophila Embryogenesis

Notch and Ras signaling pathway effector genes expressed in fusion competent and founder cells during Drosophila myogenesis

Oncology nursing students' views of a modified OSCE.

Opbp is a new architectural/insulator protein required for ribosomal gene expression.

Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state

Predictive features of gene expression variation reveal mechanistic link with differential expression

Proceedings of Patient Reported Outcome Measure's (PROMs) Conference Oxford 2017: Advances in Patient Reported Outcomes Research : Oxford, UK. 8th June 2017

Promoter shape varies across populations and affects promoter evolution and expression noise

Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks

Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity

Temporal ChIP-on-chip reveals Biniou as a universal regulator of the visceral muscle transcriptional network

The Insulator Protein CTCF Is Required for Correct Hox Gene Expression, but Not for Embryonic Development in Drosophila

The assessment and management of chemotherapy-related toxicities in patients with breast cancer, colorectal cancer, and Hodgkin's and non-Hodgkin's lymphomas: A scoping review

The cis-regulatory dynamics of embryonic development at single-cell resolution

The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription

The eSMART study protocol: a randomised controlled trial to evaluate electronic symptom management using the advanced symptom management system (ASyMS) remote technology for patients with cancer.

The importance of being specified: cell fate decisions and their role in cell biology.

The road ahead in genetics and genomics

The role of chromatin accessibility in cis-regulatory evolution