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List of works by Paula M. Mabee

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Development of the cranium and paired fins in the zebrafish Danio rerio (Ostariophysi, Cyprinidae)

scientific article published on 01 August 1996
Developmental morphology of the axial skeleton of the zebrafish, Danio rerio (Ostariophysi: Cyprinidae).

scientific article published on November 2003
Finding our way through phenotypes

scientific article
Phenotype ontologies: the bridge between genomics and evolution

scientific article published on 09 April 2007
Evolution of median fin modules in the axial skeleton of fishes

scientific article published in August 2002
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon

scientific article
Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature

scientific article (publication date: 20 May 2010)
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

scientific article published on 17 January 2013
Phenex: ontological annotation of phenotypic diversity

scientific article (publication date: 5 May 2010)
The teleost anatomy ontology: anatomical representation for the genomics age

scientific article
500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton

scientific article (publication date: June 2012)
Connecting evolutionary morphology to genomics using ontologies: a case study from Cypriniformes including zebrafish

scientific article published in September 2007
A unified anatomy ontology of the vertebrate skeletal system

scientific article (publication date: 2012)
Supraneural and Predorsal Bones in Fishes: Development and Homologies

article
The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes

scientific article
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology

scientific article
Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies

scientific article
Development of the cranium and paired fins in Betta splendens (Teleostei: Percomorpha): Intraspecific variation and interspecific comparisons

scientific article published on 01 March 1996
Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes

scientific article
The Extended Specimen Network: A Strategy to Enhance US Biodiversity Collections, Promote Research and Education

scientific article published on 22 November 2019
Gene expression patterns underlying proximal-distal skeletal segmentation in late-stage zebrafish, Danio rerio

scientific article published in November 2007
Gdf5 is expressed in the developing skeleton of median fins of late-stage zebrafish, Danio rerio

scientific article published on 23 November 2001
Development of the paired fins in the paddlefish, Polyodon spathula

scientific article published in September 2004
Early developmental plasticity and integrative responses in arctic charr (Salvelinus alpinus): effects of water velocity on body size and shape

scientific article published in July 2007
CARO – The Common Anatomy Reference Ontology

article
The Open Traits Network: Using Open Science principles to accelerate trait-based science across the Tree of Life

scientific article published on 17 February 2020
Development of the pharyngeal arch skeleton in Catostomus commersonii (Teleostei: Cypriniformes).

scientific article published in March 2009
Expression of bmp2a and bmp2b in late-stage zebrafish median fin development

scientific article published in December 2004
Developmental Data and Phylogenetic Systematics: Evolution of the Vertebrate Limb1

scholarly article by Paula M. Mabee published October 2000 in American Zoologist
Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution

scientific article published on 28 July 2015
Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy

scientific article
AN EMPIRICAL REJECTION OF THE ONTOGENETIC POLARITY CRITERION

article
Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex

scientific article
Integrating Evolution and Development: The Need for Bioinformatics in Evo-Devo

article
Emerging semantics to link phenotype and environment

scientific article
Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes.

scientific article published on 9 January 2018
Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals

scientific article
Development of the mandibular, hyoid arch and gill arch skeleton in the Chinese barb Puntius semifasciolatus: comparisons of ossification sequences among Cypriniformes

scientific article published in July 2012
Evolution of Pigment Pattern Development in Centrarchid Fishes

article
AN EXPERIMENTAL STUDY OF INTRASPECIFIC VARIATION, DEVELOPMENTAL TIMING, AND HETEROCHRONY IN FISHES

article
Effect of Clearing and Staining on Fish Length

Segmentation and fusion on the midline: basibranchial homologies in cypriniform fishes

scientific article published on 28 March 2012
Data Sources for Trait Databases: Comparing the Phenomic Content of Monographs and Evolutionary Matrices

scientific article
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems

scientific article published on 01 January 2018
Publisher Correction: Open Science principles for accelerating trait-based science across the Tree of Life

scientific article published on 01 April 2020
Phenotype Ontology Research Coordination Network meeting report: creating a community network for comparing and leveraging phenotype-genotype knowledge across species

scientific article published on 20 July 2012
Corrigendum: The Extended Specimen Network: A Strategy to Enhance US Biodiversity Collections, Promote Research and Education

scientific article published on 13 January 2020
What is an anatomy ontology?

scientific article published on October 11, 2013
rphenoscate: An R package for semantics‐aware evolutionary analyses of anatomical traits

scientific article published in 2023
Building a Global Ecosystem Research Infrastructure to Address Global Grand Challenges for Macrosystem Ecology

scientific article published in May 2022

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