List of works - Davide Albanese

A practical tool for maximal information coefficient analysis.

scientific article published on 2 April 2018

A promoter-level mammalian expression atlas

scientific article

Age and Gender Affect the Composition of Fungal Population of the Human Gastrointestinal Tract

scientific article

Alteration of Fecal Microbiota Profiles in Juvenile Idiopathic Arthritis. Associations with HLA-B27 Allele and Disease Status

scientific article (publication date: 2016)

Altered gut microbiota in Rett syndrome

scientific article published on 30 July 2016

Characterization of human breast tissue microbiota from core needle biopsies through the analysis of multi hypervariable 16S-rRNA gene regions

scientific article published in Scientific Reports

Comparison of RNA-seq and microarray-based models for clinical endpoint prediction

scientific article published on 25 June 2015

Core Microbiota and Metabolome of Vitis vinifera L. cv. Corvina Grapes and Musts.

scientific article published on 21 March 2017

Diet, Environments, and Gut Microbiota. A Preliminary Investigation in Children Living in Rural and Urban Burkina Faso and Italy.

scientific article published on 13 October 2017

Diversity and Cyclical Seasonal Transitions in the Bacterial Community in a Large and Deep Perialpine Lake

scientific article

Dynamic changes in microbiota and mycobiota during spontaneous 'Vino Santo Trentino' fermentation.

scientific article published on 18 January 2016

Environmental thresholds in the functional mycobiome of global drylands

Evaluation of the effects of intrapartum antibiotic prophylaxis on newborn intestinal microbiota using a sequencing approach targeted to multi hypervariable 16S rDNA regions

scientific article

Explaining diversity in metagenomic datasets by phylogenetic-based feature weighting

scientific article

Habitat fragmentation is associated to gut microbiota diversity of an endangered primate: implications for conservation

scientific article

Host: Microbiome co-metabolic processing of dietary polyphenols – An acute, single blinded, cross-over study with different doses of apple polyphenols in healthy subjects

scientific article published on 08 June 2018

Influence of essential oils in diet and life-stage on gut microbiota and fillet quality of rainbow trout (Oncorhynchus mykiss).

scientific article published on 31 August 2017

Insulin Resistance, Microbiota, and Fat Distribution Changes by a New Model of Vertical Sleeve Gastrectomy in Obese Rats.

scientific article

Integrating gene expression profiling and clinical data

article

Large scale genome reconstructions illuminate Wolbachia evolution

scientific article published on 16 October 2020

Large-scale quality assessment of prokaryotic genomes with metashot/prok-quality

scientific article published on 17 August 2021

Legal immigrants: invasion of alien microbial communities during winter occurring desert dust storms ⬇️

scientific article

MICCA: a complete and accurate software for taxonomic profiling of metagenomic data.

scientific article

Minerva and minepy: a C engine for the MINE suite and its R, Python and MATLAB wrappers

scientific article

New evidences on the altered gut microbiota in autism spectrum disorders

scientific article published on 22 February 2017

Reduced diversity of gut microbiota in two Aedes mosquitoes species in areas of recent invasion ⬇️

scientific article published in Scientific Reports

SaccharomycesIDentifier, SID: strain-level analysis of Saccharomyces cerevisiae populations by using microsatellite meta-patterns

scientific article

Semisupervised Profiling of Gene Expressions and Clinical Data

article

Strain profiling and epidemiology of bacterial species from metagenomic sequencing.

scientific article published on 22 December 2017

TOFwave: reproducibility in biomarker discovery from time-of-flight mass spectrometry data

scientific article

Temperature drives the assembly of endophytic communities' seasonal succession

scientific article

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

scientific article

UV index and climate seasonality explain fungal community turnover in global drylands

scientific article published on 27 November 2022

Uncovering oral Neisseria tropism and persistence using metagenomic sequencing

scientific article

List of works by Davide Albanese

A practical tool for maximal information coefficient analysis.

A promoter-level mammalian expression atlas

Age and Gender Affect the Composition of Fungal Population of the Human Gastrointestinal Tract

Alteration of Fecal Microbiota Profiles in Juvenile Idiopathic Arthritis. Associations with HLA-B27 Allele and Disease Status

Altered gut microbiota in Rett syndrome

Characterization of human breast tissue microbiota from core needle biopsies through the analysis of multi hypervariable 16S-rRNA gene regions

Comparison of RNA-seq and microarray-based models for clinical endpoint prediction

Core Microbiota and Metabolome of Vitis vinifera L. cv. Corvina Grapes and Musts.

Diet, Environments, and Gut Microbiota. A Preliminary Investigation in Children Living in Rural and Urban Burkina Faso and Italy.

Diversity and Cyclical Seasonal Transitions in the Bacterial Community in a Large and Deep Perialpine Lake

Dynamic changes in microbiota and mycobiota during spontaneous 'Vino Santo Trentino' fermentation.

Environmental thresholds in the functional mycobiome of global drylands

Evaluation of the effects of intrapartum antibiotic prophylaxis on newborn intestinal microbiota using a sequencing approach targeted to multi hypervariable 16S rDNA regions

Explaining diversity in metagenomic datasets by phylogenetic-based feature weighting

Habitat fragmentation is associated to gut microbiota diversity of an endangered primate: implications for conservation

Host: Microbiome co-metabolic processing of dietary polyphenols – An acute, single blinded, cross-over study with different doses of apple polyphenols in healthy subjects

Influence of essential oils in diet and life-stage on gut microbiota and fillet quality of rainbow trout (Oncorhynchus mykiss).

Insulin Resistance, Microbiota, and Fat Distribution Changes by a New Model of Vertical Sleeve Gastrectomy in Obese Rats.

Integrating gene expression profiling and clinical data

Large scale genome reconstructions illuminate Wolbachia evolution

Large-scale quality assessment of prokaryotic genomes with metashot/prok-quality

Legal immigrants: invasion of alien microbial communities during winter occurring desert dust storms ⬇️

MICCA: a complete and accurate software for taxonomic profiling of metagenomic data.

Minerva and minepy: a C engine for the MINE suite and its R, Python and MATLAB wrappers

New evidences on the altered gut microbiota in autism spectrum disorders

Reduced diversity of gut microbiota in two Aedes mosquitoes species in areas of recent invasion ⬇️

SaccharomycesIDentifier, SID: strain-level analysis of Saccharomyces cerevisiae populations by using microsatellite meta-patterns

Semisupervised Profiling of Gene Expressions and Clinical Data

Strain profiling and epidemiology of bacterial species from metagenomic sequencing.

TOFwave: reproducibility in biomarker discovery from time-of-flight mass spectrometry data

Temperature drives the assembly of endophytic communities' seasonal succession

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

UV index and climate seasonality explain fungal community turnover in global drylands

Uncovering oral Neisseria tropism and persistence using metagenomic sequencing