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List of works by Avi Ma'ayan

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Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

scientific article
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

scientific article
Patterns and rates of exonic de novo mutations in autism spectrum disorders

scientific article
Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages

scientific article (publication date: November 2012)
Synaptic, transcriptional and chromatin genes disrupted in autism

scientific article
Functional atlas of the integrin adhesome

scientific article (publication date: August 2007)
ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments

scientific article
Minimal differentiation of classical monocytes as they survey steady-state tissues and transport antigen to lymph nodes

scientific article published on 05 September 2013
Mutation of SHOC2 promotes aberrant protein N-myristoylation and causes Noonan-like syndrome with loose anagen hair

scientific article
Systems biology of stem cell fate and cellular reprogramming

scientific article published on 09 September 2009
Formation of regulatory patterns during signal propagation in a Mammalian cellular network

scientific article
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins

scientific article published on 03 July 2016
Systems-level dynamic analyses of fate change in murine embryonic stem cells

scientific article
Global phosphorylation analysis of beta-arrestin-mediated signaling downstream of a seven transmembrane receptor (7TMR).

scientific article
Induction of a hemogenic program in mouse fibroblasts

scientific article published on 13 June 2013
Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity

scientific article published on 28 October 2012
Differential cytokine contributions of perivascular haematopoietic stem cell niches

scientific article published on 20 February 2017
LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures

scientific article
Identification of small exonic CNV from whole-exome sequence data and application to autism spectrum disorder

scientific article
Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases

scientific article published on 4 October 2007
Design logic of a cannabinoid receptor signaling network that triggers neurite outgrowth

scientific article
KEA: kinase enrichment analysis

scientific article published on 28 January 2009
Oct4 links multiple epigenetic pathways to the pluripotency network

scientific article published on 15 November 2011
Regulation of embryonic and induced pluripotency by aurora kinase-p53 signaling

scientific article
Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers

scientific article published on 10 November 2011
Fetal liver hematopoietic stem cell niches associate with portal vessels

scientific article
Sox2 in the dermal papilla niche controls hair growth by fine-tuning BMP signaling in differentiating hair shaft progenitors

scientific article published on November 2012
Massive mining of publicly available RNA-seq data from human and mouse

scientific article published on 10 April 2018
A systems approach identifies HIPK2 as a key regulator of kidney fibrosis

scientific article published on 11 March 2012
The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations

scientific article published on 24 November 2017
Polycomb repressive complex 2 (PRC2) silences genes responsible for neurodegeneration

scientific article published on 15 August 2016
An Integrated Transcriptome Atlas of Embryonic Hair Follicle Progenitors, Their Niche, and the Developing Skin.

scientific article published on 5 August 2015
Systems pharmacology of arrhythmias

scientific article
Pharos: Collating protein information to shed light on the druggable genome

scientific article
The characteristic direction: a geometrical approach to identify differentially expressed genes

scientific article
Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd.

scientific article published on 26 September 2016
Unexplored therapeutic opportunities in the human genome.

scientific article published on 23 February 2018
Kruppel-like factor 15 (KLF15) is a key regulator of podocyte differentiation

scientific journal article
L1000CDS2: LINCS L1000 characteristic direction signatures search engine

scientific article
DAWN: a framework to identify autism genes and subnetworks using gene expression and genetics

scientific article
Toward predictive models of mammalian cells

scientific article
Network analysis of FDA approved drugs and their targets

scientific article
Systems biology of kidney diseases

scientific article published on 31 August 2011
Histone H3.3 and its proteolytically processed form drive a cellular senescence programme

scientific article
Activation of tumor suppressor protein PP2A inhibits KRAS-driven tumor growth.

scientific article
Drug-induced adverse events prediction with the LINCS L1000 data

scientific article
Construction and validation of a regulatory network for pluripotency and self-renewal of mouse embryonic stem cells

scientific article
Lean Big Data integration in systems biology and systems pharmacology

scientific article
Insights into the organization of biochemical regulatory networks using graph theory analyses

scientific article published on 20 October 2008
Signaling Networks among Stem Cell Precursors, Transit-Amplifying Progenitors, and their Niche in Developing Hair Follicles.

scientific article

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