List of works - Samuele Bovo

A comparative analysis of label-free liquid chromatography-mass spectrometry liver proteomic profiles highlights metabolic differences between pig breeds

scientific article published in PLoS ONE

A comparative genome landscape of mitochondrial DNA insertions into two cattle nuclear genome versions

scientific article published on 04 December 2019

A genome-wide association study for a proxy of intermuscular fat level in the Italian Large White breed identifies genomic regions affecting an important quality parameter for dry-cured hams

scientific article published on 3 February 2017

A genomic landscape of mitochondrial DNA insertions in the pig nuclear genome provides evolutionary signatures of interspecies admixture

scientific article published on 27 April 2017

A machine learning approach for the identification of population-informative markers from high-throughput genotyping data: application to several pig breeds

scientific article published on 11 October 2019

A next generation sequencing approach for targeted Varroa destructor (Acari: Varroidae) mitochondrial DNA analysis based on honey derived environmental DNA

scientific article published on 30 January 2019

A viral metagenomic approach on a non-metagenomic experiment: Mining next generation sequencing datasets from pig DNA identified several porcine parvoviruses for a retrospective evaluation of viral infections

scientific article

Application of Next Generation Semiconductor-Based Sequencing for the Identification of Apis mellifera Complementary Sex Determiner (csd) Alleles from Honey DNA

scientific article published on 25 September 2021

Application of next generation semiconductor based sequencing for species identification in dairy products

article

Application of next generation semiconductor based sequencing to detect the botanical composition of monofloral, polyfloral and honeydew honey

scientific article published on 01 December 2017

Are machine learning based methods suited to address complex biological problems? Lessons from CAGI-5 challenges

scientific article published on 18 June 2019

Association between a polymorphism in the IGF2 gene and finishing weight in a commercial rabbit population

scientific article published on 9 February 2012

Benchmarking predictions of allostery in liver pyruvate kinase in CAGI4.

scientific article published on 29 March 2017

Comparative evaluation of genomic inbreeding parameters in seven commercial and autochthonous pig breeds

scientific article published on 13 January 2020

Comparative selection signature analyses identify genomic footprints in Reggiana cattle, the traditional breed of the Parmigiano-Reggiano cheese production system

scientific article published on 13 January 2020

Deconstructing the pig sex metabolome: Targeted metabolomics in heavy pigs revealed sexual dimorphisms in plasma biomarkers and metabolic pathways

scientific article published on 01 December 2015

Dose-response of different dietary leucine levels on growth performance and amino acid metabolism in piglets differing for aminoadipate-semialdehyde synthase genotypes

scientific article published on 06 December 2019

Entomological signatures in honey: an environmental DNA metabarcoding approach can disclose information on plant-sucking insects in agricultural and forest landscapes

scientific article published in Scientific Reports

Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge

scientific article published on 12 July 2019

Exploiting within‐breed variability in the autochthonous Reggiana breed identified several candidate genes affecting pigmentation‐related traits, stature and udder defects in cattle

scientific article published on 28 June 2021

Few mitochondrial DNA sequences are inserted into the turkey (Meleagris gallopavo) nuclear genome: evolutionary analyses and informativity in the domestic lineage

scientific article published on 09 March 2018

Genome-wide association studies for 30 haematological and blood clinical-biochemical traits in Large White pigs reveal genomic regions affecting intermediate phenotypes

scientific article published on 07 May 2019

Genome-wide association studies for iris pigmentation and heterochromia patterns in Large White pigs

scientific article published on 31 March 2020

Genome-wide association studies for seven production traits highlight genomic regions useful to dissect dry-cured ham quality and production traits in Duroc heavy pigs

article

Genome-wide association studies for the number of teats and teat asymmetry patterns in Large White pigs

scientific article published on 03 May 2020

Genome-wide association study for ham weight loss at first salting in Italian Large White pigs: towards the genetic dissection of a key trait for dry-cured ham production

scientific article published on 5 September 2016

Genome-wide detection of copy number variants in European autochthonous and commercial pig breeds by whole-genome sequencing of DNA pools identified breed-characterising copy number states

scientific article published on 08 June 2020

Genomic diversity, linkage disequilibrium and selection signatures in European local pig breeds assessed with a high density SNP chip

scientific article published on 19 September 2019

Haplotype-based genome-wide association studies reveal new loci for haematological and clinical-biochemical parameters in Large White pigs

scientific article published on 08 June 2020

Identification of a major locus determining a pigmentation defect in cultivated gilthead seabream (Sparus aurata)

scientific article published on 03 January 2020

Metabolomics evidences plasma and serum biomarkers differentiating two heavy pig breeds.

scientific article published on 8 April 2016

Microscopic ossicle analyses and the complete mitochondrial genome sequence of Holothuria (Roweothuria) polii (Echinodermata; Holothuroidea) provide new information to support the phylogenetic positioning of this sea cucumber species

scientific article published on 19 December 2019

NET-GE: a web-server for NETwork-based human gene enrichment

scientific article published on 02 August 2016

NETGE-PLUS: Standard and Network-Based Gene Enrichment Analysis in Human and Model Organisms

scientific article published on 04 February 2020

One Health and Cattle Genetic Resources: Mining More than 500 Cattle Genomes to Identify Variants in Candidate Genes Potentially Affecting Coronavirus Infections

scientific article published in 2022

Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges

scientific article published on 24 June 2019

Reduced Representation Libraries from DNA Pools Analysed with Next Generation Semiconductor Based-Sequencing to Identify SNPs in Extreme and Divergent Pigs for Back Fat Thickness