List of works - Ali Önder Yildirim

A comprehensive and comparative phenotypic analysis of the collaborative founder strains identifies new and known phenotypes

scientific article published on 14 February 2020

A single DH gene segment is sufficient for the establishment of an asthma phenotype in a murine model of allergic airway inflammation.

scientific article published on 29 June 2011

Abca3 haploinsufficiency is a risk factor for lung injury induced by hyperoxia or mechanical ventilation in a murine model

scientific article published on 23 July 2013

Activation of the WNT/β-catenin pathway attenuates experimental emphysema

scientific article

Analysis of mammalian gene function through broad-based phenotypic screens across a consortium of mouse clinics

scientific article

Autoprocessing of neutrophil elastase near its active site reduces the efficiency of natural and synthetic elastase inhibitors.

scientific article published on 10 April 2015

CD4+ T cells from mice with intestinal immediate-type hypersensitivity induce airway hyperreactivity.

scientific article

CXCR2 mediates NADPH oxidase-independent neutrophil extracellular trap formation in cystic fibrosis airway inflammation.

scientific article published on 5 September 2010

Cathepsin B promotes collagen biosynthesis driving Bronchiolitis Obliterans Syndrome

scientific article published on 10 December 2020

Cholesterol metabolism promotes B-cell positioning during immune pathogenesis of chronic obstructive pulmonary disease.

scientific article published on 19 April 2018

Cigarette smoke-induced disruption of bronchial epithelial tight junctions is prevented by transforming growth factor-β.

scientific article published on June 2014

Classical transient receptor potential 6 (TRPC6) channels support myofibroblast differentiation and development of experimental pulmonary fibrosis

scientific article published on 05 December 2016

Coactivator-Associated Arginine Methyltransferase-1 Function in Alveolar Epithelial Senescence and Elastase-Induced Emphysema Susceptibility

scientific article

Comparison of contrast-to-noise ratios of transmission and dark-field signal in grating-based X-ray imaging for healthy murine lung tissue.

scientific article

Composition of the immunoglobulin classic antigen-binding site regulates allergic airway inflammation in a murine model of experimental asthma.

scientific article published on 3 February 2009

Diagnosing and mapping pulmonary emphysema on X-ray projection images: incremental value of grating-based X-ray dark-field imaging

scientific article

Distal airways are protected from goblet cell metaplasia by diminished expression of IL-13 signalling components

scientific article published on 14 March 2015

Distribution of the hyaluronate lyase encoding gene hylB and the insertion element IS1548 in streptococci of serological group B isolated from animals and humans

scientific article published on 01 October 2002

Effective prevention and therapy of experimental allergic asthma using a GATA-3-specific DNAzyme.

scientific article

Emphysema diagnosis using X-ray dark-field imaging at a laser-driven compact synchrotron light source

scientific article

Fgf9 (Y162C) Mutation Alters Information Processing and Social Memory in Mice

scientific article published on 10 July 2017

Free DNA in cystic fibrosis airway fluids correlates with airflow obstruction

scientific article

Grating-based X-ray Dark-field Computed Tomography of Living Mice.

scientific article

High mobility group N proteins modulate the fidelity of the cellular transcriptional profile in a tissue- and variant-specific manner

scientific article

High-resolution short-exposure small-animal laboratory x-ray phase-contrast tomography

scientific article

Identification and characterization of Streptococcus agalactiae isolated from horses.

scientific article

Improved In vivo Assessment of Pulmonary Fibrosis in Mice using X-Ray Dark-Field Radiography.

scientific article

Improved diagnosis of pulmonary emphysema using in vivo dark-field radiography.

scientific article published in October 2014

In Vivo Dark-Field Radiography for Early Diagnosis and Staging of Pulmonary Emphysema.

scientific article published in July 2015

Increased protein arginine methylation in chronic hypoxia: role of protein arginine methyltransferases

scientific journal article

Inflammaging increases susceptibility to cigarette smoke-induced COPD.

scientific article published on 29 May 2015

Inhibition of LTβR signalling activates WNT-induced regeneration in lung

scientific article published on 04 November 2020

Innovations in phenotyping of mouse models in the German Mouse Clinic

scientific article

Loss of classical transient receptor potential 6 channel reduces allergic airway response.

scientific article published on 9 July 2008

Lung emphysema and impaired macrophage elastase clearance in mucolipin 3 deficient mice

scientific article published on 14 January 2022

Lung tumors on multimodal radiographs derived from grating-based X-ray imaging--a feasibility study.

scientific article published on 7 December 2013

Maternal TLR signaling is required for prenatal asthma protection by the nonpathogenic microbe Acinetobacter lwoffii F78

scientific article

Metabolomics screening identifies reduced L-carnitine to be associated with progressive emphysema

scientific article published on 12 November 2015

Mouse Genetics and Metabolic Mouse Phenotyping

article

Mouse nuclear myosin I knock-out shows interchangeability and redundancy of myosin isoforms in the cell nucleus

scientific article

Nerve growth factor induces type III collagen production in chronic allergic airway inflammation.

scientific article

Nitrogen dioxide induces apoptosis and proliferation but not emphysema in rat lungs.

scientific article published on 18 January 2007

Offspring born to influenza A virus infected pregnant mice have increased susceptibility to viral and bacterial infections in early life

scientific article published on 16 August 2021

Phenotypic drug screening in a human fibrosis model identified a novel class of antifibrotic therapeutics

scientific article published on 22 December 2021

Propagation-based Phase-Contrast X-ray Imaging at a Compact Light Source

scientific article

Publisher Correction: Inhibition of LTβR signalling activates WNT-induced regeneration in lung

scientific article published on 22 December 2020

Pulmonary emphysema diagnosis with a preclinical small-animal X-ray dark-field scatter-contrast scanner.

scientific article

Regeneration von Lungenparenchym - eine Chance für die Zukunft

scientific article published on 01 April 2006

Selective depletion of Foxp3+ Treg during sensitization phase aggravates experimental allergic airway inflammation

scientific article published on 01 August 2010

Septicaemia in emerald monitors (Varanus prasinus Schlegel 1839) caused by Streptococcus agalactiae acquired from mice

scientific article published on 01 September 2003

TLR-4-mediated innate immunity is reduced in cystic fibrosis airway cells.

scientific article

The First Scube3 Mutant Mouse Line with Pleiotropic Phenotypic Alterations.

scientific article

The arginine methyltransferase PRMT7 promotes extravasation of monocytes resulting in tissue injury in COPD

scientific article published on 14 March 2022

The chitinase-like protein YKL-40 modulates cystic fibrosis lung disease.

scientific article

The composition of cigarette smoke determines inflammatory cell recruitment to the lung in COPD mouse models.

scientific article published on February 2014

Total particulate matter concentration skews cigarette smoke's gene expression profile

scientific article

Understanding gene functions and disease mechanisms: Phenotyping pipelines in the German Mouse Clinic

scientific article

List of works by Ali Önder Yildirim

A comprehensive and comparative phenotypic analysis of the collaborative founder strains identifies new and known phenotypes

A single DH gene segment is sufficient for the establishment of an asthma phenotype in a murine model of allergic airway inflammation.

Abca3 haploinsufficiency is a risk factor for lung injury induced by hyperoxia or mechanical ventilation in a murine model

Activation of the WNT/β-catenin pathway attenuates experimental emphysema

Analysis of mammalian gene function through broad-based phenotypic screens across a consortium of mouse clinics

Autoprocessing of neutrophil elastase near its active site reduces the efficiency of natural and synthetic elastase inhibitors.

CD4+ T cells from mice with intestinal immediate-type hypersensitivity induce airway hyperreactivity.

CXCR2 mediates NADPH oxidase-independent neutrophil extracellular trap formation in cystic fibrosis airway inflammation.

Cathepsin B promotes collagen biosynthesis driving Bronchiolitis Obliterans Syndrome

Cholesterol metabolism promotes B-cell positioning during immune pathogenesis of chronic obstructive pulmonary disease.

Cigarette smoke-induced disruption of bronchial epithelial tight junctions is prevented by transforming growth factor-β.

Classical transient receptor potential 6 (TRPC6) channels support myofibroblast differentiation and development of experimental pulmonary fibrosis

Coactivator-Associated Arginine Methyltransferase-1 Function in Alveolar Epithelial Senescence and Elastase-Induced Emphysema Susceptibility

Comparison of contrast-to-noise ratios of transmission and dark-field signal in grating-based X-ray imaging for healthy murine lung tissue.

Composition of the immunoglobulin classic antigen-binding site regulates allergic airway inflammation in a murine model of experimental asthma.

Diagnosing and mapping pulmonary emphysema on X-ray projection images: incremental value of grating-based X-ray dark-field imaging

Distal airways are protected from goblet cell metaplasia by diminished expression of IL-13 signalling components

Distribution of the hyaluronate lyase encoding gene hylB and the insertion element IS1548 in streptococci of serological group B isolated from animals and humans

Effective prevention and therapy of experimental allergic asthma using a GATA-3-specific DNAzyme.

Emphysema diagnosis using X-ray dark-field imaging at a laser-driven compact synchrotron light source

Fgf9 (Y162C) Mutation Alters Information Processing and Social Memory in Mice

Free DNA in cystic fibrosis airway fluids correlates with airflow obstruction

Grating-based X-ray Dark-field Computed Tomography of Living Mice.

High mobility group N proteins modulate the fidelity of the cellular transcriptional profile in a tissue- and variant-specific manner

High-resolution short-exposure small-animal laboratory x-ray phase-contrast tomography

Identification and characterization of Streptococcus agalactiae isolated from horses.

Improved In vivo Assessment of Pulmonary Fibrosis in Mice using X-Ray Dark-Field Radiography.

Improved diagnosis of pulmonary emphysema using in vivo dark-field radiography.

In Vivo Dark-Field Radiography for Early Diagnosis and Staging of Pulmonary Emphysema.

Increased protein arginine methylation in chronic hypoxia: role of protein arginine methyltransferases

Inflammaging increases susceptibility to cigarette smoke-induced COPD.

Inhibition of LTβR signalling activates WNT-induced regeneration in lung

Innovations in phenotyping of mouse models in the German Mouse Clinic

Loss of classical transient receptor potential 6 channel reduces allergic airway response.

Lung emphysema and impaired macrophage elastase clearance in mucolipin 3 deficient mice

Lung tumors on multimodal radiographs derived from grating-based X-ray imaging--a feasibility study.

Maternal TLR signaling is required for prenatal asthma protection by the nonpathogenic microbe Acinetobacter lwoffii F78

Metabolomics screening identifies reduced L-carnitine to be associated with progressive emphysema

Mouse Genetics and Metabolic Mouse Phenotyping

Mouse nuclear myosin I knock-out shows interchangeability and redundancy of myosin isoforms in the cell nucleus

Nerve growth factor induces type III collagen production in chronic allergic airway inflammation.

Nitrogen dioxide induces apoptosis and proliferation but not emphysema in rat lungs.

Offspring born to influenza A virus infected pregnant mice have increased susceptibility to viral and bacterial infections in early life

Phenotypic drug screening in a human fibrosis model identified a novel class of antifibrotic therapeutics

Propagation-based Phase-Contrast X-ray Imaging at a Compact Light Source

Publisher Correction: Inhibition of LTβR signalling activates WNT-induced regeneration in lung

Pulmonary emphysema diagnosis with a preclinical small-animal X-ray dark-field scatter-contrast scanner.

Regeneration von Lungenparenchym - eine Chance für die Zukunft

Selective depletion of Foxp3+ Treg during sensitization phase aggravates experimental allergic airway inflammation

Septicaemia in emerald monitors (Varanus prasinus Schlegel 1839) caused by Streptococcus agalactiae acquired from mice

TLR-4-mediated innate immunity is reduced in cystic fibrosis airway cells.

The First Scube3 Mutant Mouse Line with Pleiotropic Phenotypic Alterations.

The arginine methyltransferase PRMT7 promotes extravasation of monocytes resulting in tissue injury in COPD

The chitinase-like protein YKL-40 modulates cystic fibrosis lung disease.

The composition of cigarette smoke determines inflammatory cell recruitment to the lung in COPD mouse models.

Total particulate matter concentration skews cigarette smoke's gene expression profile

Understanding gene functions and disease mechanisms: Phenotyping pipelines in the German Mouse Clinic