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List of works by Marc van Dijk

3D-DART: a DNA structure modelling server

scientific article

A Comparative Linear Interaction Energy and MM/PBSA Study on SIRT1-Ligand Binding Free Energy Calculation

scientific article published on 11 September 2019

A Flexible, Grid-Enabled Web Portal for GROMACS Molecular Dynamics Simulations.

scientific article published on 18 April 2012

A protein-DNA docking benchmark

scientific article

Binding free energy predictions of farnesoid X receptor (FXR) agonists using a linear interaction energy (LIE) approach with reliability estimation: application to the D3R Grand Challenge 2.

scientific article published on 9 September 2017

Blind prediction of interfacial water positions in CAPRI

scientific article

Comprehensive and Automated Linear Interaction Energy Based Binding-Affinity Prediction for Multifarious Cytochrome P450 Aromatase Inhibitors

scientific article published on 04 August 2017

Defining the limits of homology modeling in information-driven protein docking

scientific article published on 17 October 2013

Drug toxicity profiling of a Saccharomyces cerevisiae deubiquitinase deletion panel shows that acetaminophen mimics tyrosine.

scientific article published on 16 December 2017

Information-driven protein-DNA docking using HADDOCK: it is a matter of flexibility

scientific article

Inter-individual variability in activity of the major drug metabolizing enzymes in liver homogenates of 20 Individuals

scientific article published on 8 January 2018

Mass spec studio for integrative structural biology.

scientific article

Protein-Protein Docking with HADDOCK

scientific article published on 21 March 2012

Pushing the limits of what is achievable in protein-DNA docking: benchmarking HADDOCK's performance.

scientific article published on 13 May 2010

Rapid prediction of multi-dimensional NMR data sets

scientific article

Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI (page 418).

scientific article published in August 2017

Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.

scientific article

Solvated protein-DNA docking using HADDOCK.

scientific article

Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions.

scientific article

The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.

scientific article

The Prediction of Macromolecular Complexes by Docking

scientific article published on 18 December 2008

The structure of the XPF-ssDNA complex underscores the distinct roles of the XPF and ERCC1 helix- hairpin-helix domains in ss/ds DNA recognition

scientific article

WeNMR: Structural Biology on the Grid

scientific article published on 30 November 2012

eTOX ALLIES: an automated pipeLine for linear interaction energy-based simulations.

scientific article published on 21 November 2017

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