List of works - Filippo Biscarini

"Noisy beets": impact of phenotyping errors on genomic predictions for binary traits in Beta vulgaris

scientific article published on 18 July 2016

A first update on mapping the human genetic architecture of COVID-19

scientific article published on 3 August 2022

A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions

scientific article published on 03 July 2019

A new polymorphism on chromosome 6 associated with bolting tendency in sugar beet

scientific article published on 7 December 2015

Across-line SNP association study for (innate) immune and behavioral traits in laying hens

scientific article

Across-line SNP association study of innate and adaptive immune response in laying hens.

scientific article

Analysis of Hindgut Microbiome of Sheep and Effect of Different Husbandry Conditions

scientific article published on 22 December 2020

Characterization of Bacterial Microbiota Composition along the Gastrointestinal Tract in Rabbits

scientific article published on 26 December 2020

Combining micro-RNA and protein sequencing to detect robust biomarkers for Graves' disease and orbitopathy.

scientific article

Convergent genomic signatures of domestication in sheep and goats.

scientific article published on 6 March 2018

Dietary Administration of L-Carnitine During the Fattening Period of Early Feed Restricted Lambs Modifies Ruminal Fermentation but Does Not Improve Feed Efficiency

scientific article published on 24 February 2022

Dscam1 web server: online prediction of Dscam1 self- and hetero-affinity.

scientific article

Effect of hulled <i>Cannabis sativa</i> L. seeds in a home-made diet for adult dogs

scientific article published on 17 August 2023

Estimation of heritability and breeding values for early egg production in laying hens from pooled data.

scientific article

Estimation of variance components and prediction of breeding values using pooled data.

scientific article

Feeding Pre-weaned Calves With Waste Milk Containing Antibiotic Residues Is Related to a Higher Incidence of Diarrhea and Alterations in the Fecal Microbiota

scientific article published on 08 July 2021

Genetic parameters and across-line SNP associations differ for natural antibody isotypes IgM and IgG in laying hens.

scientific article published on 12 December 2012

Genetic response of a perennial grass to warm and wet environments interacts and is associated with trait means as well as plasticity

Genome-Wide Analysis of japonica Rice Performance under Limited Water and Permanent Flooding Conditions

scientific article published on 30 October 2017

Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions

scientific article

Genome-enabled predictions for binomial traits in sugar beet populations

scientific article

Genome-enabled predictions for fruit weight and quality from repeated records in European peach progenies.

scientific article

Genome-wide Analyses Identifies Known and New Markers Responsible of Chicken Plumage Color

scientific article published on 15 March 2020

Genome-wide diversity and runs of homozygosity in the "Braque Français, type Pyrénées" dog breed

scientific article published on 9 January 2018

Genomic characterization of the Braque Français type Pyrénées dog and relationship with other breeds

scientific article published in PLoS ONE

Gut Microbiome in BALB/c and C57BL/6J Mice Undergoing Experimental Thyroid Autoimmunity Associate with Differences in Immunological Responses and Thyroid Function

scientific article published on 14 August 2018

Gut microbiome modifications over time when removing in-feed antibiotics from the prophylaxis of post-weaning diarrhea in piglets

scientific article published on 07 March 2022

Gut microbiota in experimental murine model of Graves' orbitopathy established in different environments may modulate clinical presentation of disease.

scientific article

High-Throughput RAD-SNP Genotyping for Characterization of Sugar Beet Genotypes

article by Piergiorgio Stevanato et al published 13 November 2013 in Plant Molecular Biology Reporter

Imputation accuracy is robust to cattle reference genome updates

scientific article published on 16 December 2014

Inbreeding and purging at the genomic Level: the Chillingham cattle reveal extensive, non-random SNP heterozygosity.

scientific article published on 11 November 2015

Insights into Genetic Diversity, Runs of Homozygosity and Heterozygosity-Rich Regions in Maremmana Semi-Feral Cattle Using Pedigree and Genomic Data

scientific article published on 03 December 2020

Invited review: Large-scale indirect measurements for enteric methane emissions in dairy cattle: A review of proxies and their potential for use in management and breeding decisions.

scientific article published on February 2017

Lessons learnt on the analysis of large sequence data in animal genomics.

scientific article published on 6 April 2018

Predicting haplotype carriers from SNP genotypes in Bos taurus through linear discriminant analysis

scientific article

Prospects and challenges for the conservation of farm animal genomic resources, 2015-2025

scientific article

Relative extended haplotype homozygosity signals across breeds reveal dairy and beef specific signatures of selection

scientific article

Revisiting demographic processes in cattle with genome-wide population genetic analysis

scientific article

Risk factors associated with case fatality in 225 diarrhoeic calves: A retrospective study

scientific article published on 19 October 2017

Rumen microbiome in dairy calves fed copper and grape-pomace dietary supplementations: Composition and predicted functional profile

scientific article published in PLoS ONE

Software solutions for the livestock genomics SNP array revolution.

scientific article published on 23 April 2015

Targeted Next-Generation Sequencing Identification of Mutations in Disease Resistance Gene Analogs (RGAs) in Wild and Cultivated Beets.

scientific article published on 11 October 2017

The effect of mislabeled phenotypic status on the identification of mutation-carriers from SNP genotypes in dairy cattle.

scientific article

The use of genetic markers to estimate relationships between dogs in the course of criminal investigations.

scientific article published on 17 August 2017

Use of SNP genotypes to identify carriers of harmful recessive mutations in cattle populations.

scientific article

zanardi: an open-source pipeline for multiple-species genomic analysis of SNP array data.

scientific article

List of works by Filippo Biscarini

"Noisy beets": impact of phenotyping errors on genomic predictions for binary traits in Beta vulgaris

A first update on mapping the human genetic architecture of COVID-19

A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions

A new polymorphism on chromosome 6 associated with bolting tendency in sugar beet

Across-line SNP association study for (innate) immune and behavioral traits in laying hens

Across-line SNP association study of innate and adaptive immune response in laying hens.

Analysis of Hindgut Microbiome of Sheep and Effect of Different Husbandry Conditions

Characterization of Bacterial Microbiota Composition along the Gastrointestinal Tract in Rabbits

Combining micro-RNA and protein sequencing to detect robust biomarkers for Graves' disease and orbitopathy.

Convergent genomic signatures of domestication in sheep and goats.

Dietary Administration of L-Carnitine During the Fattening Period of Early Feed Restricted Lambs Modifies Ruminal Fermentation but Does Not Improve Feed Efficiency

Dscam1 web server: online prediction of Dscam1 self- and hetero-affinity.

Effect of hulled <i>Cannabis sativa</i> L. seeds in a home-made diet for adult dogs

Estimation of heritability and breeding values for early egg production in laying hens from pooled data.

Estimation of variance components and prediction of breeding values using pooled data.

Feeding Pre-weaned Calves With Waste Milk Containing Antibiotic Residues Is Related to a Higher Incidence of Diarrhea and Alterations in the Fecal Microbiota

Genetic parameters and across-line SNP associations differ for natural antibody isotypes IgM and IgG in laying hens.

Genetic response of a perennial grass to warm and wet environments interacts and is associated with trait means as well as plasticity

Genome-Wide Analysis of japonica Rice Performance under Limited Water and Permanent Flooding Conditions

Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions

Genome-enabled predictions for binomial traits in sugar beet populations

Genome-enabled predictions for fruit weight and quality from repeated records in European peach progenies.

Genome-wide Analyses Identifies Known and New Markers Responsible of Chicken Plumage Color

Genome-wide diversity and runs of homozygosity in the "Braque Français, type Pyrénées" dog breed

Genomic characterization of the Braque Français type Pyrénées dog and relationship with other breeds

Gut Microbiome in BALB/c and C57BL/6J Mice Undergoing Experimental Thyroid Autoimmunity Associate with Differences in Immunological Responses and Thyroid Function

Gut microbiome modifications over time when removing in-feed antibiotics from the prophylaxis of post-weaning diarrhea in piglets

Gut microbiota in experimental murine model of Graves' orbitopathy established in different environments may modulate clinical presentation of disease.

High-Throughput RAD-SNP Genotyping for Characterization of Sugar Beet Genotypes

Imputation accuracy is robust to cattle reference genome updates

Inbreeding and purging at the genomic Level: the Chillingham cattle reveal extensive, non-random SNP heterozygosity.

Insights into Genetic Diversity, Runs of Homozygosity and Heterozygosity-Rich Regions in Maremmana Semi-Feral Cattle Using Pedigree and Genomic Data

Invited review: Large-scale indirect measurements for enteric methane emissions in dairy cattle: A review of proxies and their potential for use in management and breeding decisions.

Lessons learnt on the analysis of large sequence data in animal genomics.

Predicting haplotype carriers from SNP genotypes in Bos taurus through linear discriminant analysis

Prospects and challenges for the conservation of farm animal genomic resources, 2015-2025

Relative extended haplotype homozygosity signals across breeds reveal dairy and beef specific signatures of selection

Revisiting demographic processes in cattle with genome-wide population genetic analysis

Risk factors associated with case fatality in 225 diarrhoeic calves: A retrospective study

Rumen microbiome in dairy calves fed copper and grape-pomace dietary supplementations: Composition and predicted functional profile

Software solutions for the livestock genomics SNP array revolution.

Targeted Next-Generation Sequencing Identification of Mutations in Disease Resistance Gene Analogs (RGAs) in Wild and Cultivated Beets.

The effect of mislabeled phenotypic status on the identification of mutation-carriers from SNP genotypes in dairy cattle.

The use of genetic markers to estimate relationships between dogs in the course of criminal investigations.

Use of SNP genotypes to identify carriers of harmful recessive mutations in cattle populations.

zanardi: an open-source pipeline for multiple-species genomic analysis of SNP array data.