List of works - Atsushi Nakagawa

Host innate immune receptors and beyond: making sense of microbial infections

scientific article

14-3-3 proteins act as intracellular receptors for rice Hd3a florigen

scientific article

How coenzyme B12 radicals are generated: the crystal structure of methylmalonyl-coenzyme A mutase at 2 A resolution

scientific article

A high-resolution structure of the pre-microRNA nuclear export machinery

scientific article

Crystal structure of the DsbB-DsbA complex reveals a mechanism of disulfide bond generation

scientific article

The structure of importin-beta bound to SREBP-2: nuclear import of a transcription factor

scientific article

Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1)

scientific article published on April 25, 2011

X-ray crystal structure of voltage-gated proton channel

scientific article published on 2 March 2014

Immunogenicity of whole-parasite vaccines against Plasmodium falciparum involves malarial hemozoin and host TLR9.

scientific article published in January 2010

Structure of the carboxyl-terminal Src kinase, Csk

scientific article

Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format

scientific article

Targeting AMAP1 and cortactin binding bearing an atypical src homology 3/proline interface for prevention of breast cancer invasion and metastasis

scientific article

Structure of rat monoamine oxidase A and its specific recognitions for substrates and inhibitors

scientific article published in April 2004

Crystal structure of nitric oxide reductase from denitrifying fungus Fusarium oxysporum

scientific article published on October 1, 1997

The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins

scientific article

A new protein complex promoting the assembly of Rad51 filaments

scientific article published on January 1, 2013

Crystal structure of human D-dopachrome tautomerase, a homologue of macrophage migration inhibitory factor, at 1.54 A resolution

scientific article

Escherichia coli positive regulator OmpR has a large loop structure at the putative RNA polymerase interaction site

scientific article

The cytoplasmic coiled-coil mediates cooperative gating temperature sensitivity in the voltage-gated H(+) channel Hv1

scientific article

Dynamic nature of disulphide bond formation catalysts revealed by crystal structures of DsbB

scientific article

Crystal Structure of the Cytoplasmic Phosphatase and Tensin Homolog (PTEN)-like Region of Ciona intestinalis Voltage-sensing Phosphatase Provides Insight into Substrate Specificity and Redox Regulation of the Phosphoinositide Phosphatase Activity

scientific article

Ribosomal protein S7: a new RNA-binding motif with structural similarities to a DNA architectural factor

scientific article

Crystal structure of mammalian alpha1,6-fucosyltransferase, FUT8

scientific article

High-resolution crystal structure of beta2-microglobulin formed at pH 7.0

scientific article

Crystal structure of the hemolytic lectin CEL-III isolated from the marine invertebrate Cucumaria echinata: implications of domain structure for its membrane pore-formation mechanism

scientific article published on 11 June 2004

Crystallographic Analysis Reveals Octamerization of Viroplasm Matrix Protein P9-1 of Rice Black Streaked Dwarf Virus

scientific article

Recombinant mammalian tubulin polyglutamylase TTLL7 performs both initiation and elongation of polyglutamylation on beta-tubulin through a random sequential pathway

scientific journal article

Structure of human erythrocyte NADH-cytochrome b5 reductase.

scientific article

Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source

scientific article published in August 2016

Entropic stabilization of the tryptophan synthase alpha-subunit from a hyperthermophile, Pyrococcus furiosus. X-ray analysis and calorimetry

scientific article

Transcapsidation and the Conserved Interactions of Two Major Structural Proteins of a Pair of Phytoreoviruses Confirm the Mechanism of Assembly of the Outer Capsid Layer

scientific article published on 01 January 2005

Crystal structure of 1-aminocyclopropane-1-carboxylate deaminase from Hansenula saturnus

scientific article

Lipocalin 2 bolsters innate and adaptive immune responses to blood-stage malaria infection by reinforcing host iron metabolism

scientific article published in November 2012

Structural evolution of reoviridae revealed by oryzavirus in acquiring the second capsid shell.

scientific article published on 10 September 2008

Conformation of amyloid fibrils of beta2-microglobulin probed by tryptophan mutagenesis

scientific article published on 10 August 2006

Magnesium(II) and zinc(II)-protoporphyrin IX's stabilize the lowest oxygen affinity state of human hemoglobin even more strongly than deoxyheme

scientific article

Matching the crystallographic structure of ribosomal protein S7 to a three-dimensional model of the 16S ribosomal RNA

scientific article published on May 1, 1998

Structure and thermodynamics of the extraordinarily stable molten globule state of canine milk lysozyme

scientific article

Structural basis for the assembly of the Ragulator-Rag GTPase complex

scientific article published on 20 November 2017

Crystal structure of bovine lipoyltransferase in complex with lipoyl-AMP

scientific article

Molecular cloning of human D-dopachrome tautomerase cDNA: N-terminal proline is essential for enzyme activation

scientific article

Crystal structure of human T-protein of glycine cleavage system at 2.0 A resolution and its implication for understanding non-ketotic hyperglycinemia

scientific journal article

A Structural Determinant for the Control of PIP2 Sensitivity in G Protein-gated Inward Rectifier K+ Channels

scientific article published on September 29, 2010

The host-binding domain of the P2 phage tail spike reveals a trimeric iron-binding structure

scientific article

Orexin-A is composed of a highly conserved C-terminal and a specific, hydrophilic N-terminal region, revealing the structural basis of specific recognition by the orexin-1 receptor

scientific article published in July 2006

The crystal structures of semi-synthetic aequorins

scientific article

Crystallization and preliminary X-ray diffraction analysis of recombinant hepatitis E virus-like particle.

scientific article published on 29 March 2008

Crystal structure analysis of the translation factor RF3 (release factor 3)

scientific article published on September 6, 2012

Viroplasm matrix protein Pns9 from rice gall dwarf virus forms an octameric cylindrical structure

scientific article published on 25 May 2011

Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase

scientific article

List of works by Atsushi Nakagawa

Host innate immune receptors and beyond: making sense of microbial infections

14-3-3 proteins act as intracellular receptors for rice Hd3a florigen

How coenzyme B12 radicals are generated: the crystal structure of methylmalonyl-coenzyme A mutase at 2 A resolution

A high-resolution structure of the pre-microRNA nuclear export machinery

Crystal structure of the DsbB-DsbA complex reveals a mechanism of disulfide bond generation

The structure of importin-beta bound to SREBP-2: nuclear import of a transcription factor

Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1)

X-ray crystal structure of voltage-gated proton channel

Immunogenicity of whole-parasite vaccines against Plasmodium falciparum involves malarial hemozoin and host TLR9.

Structure of the carboxyl-terminal Src kinase, Csk

Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format

Targeting AMAP1 and cortactin binding bearing an atypical src homology 3/proline interface for prevention of breast cancer invasion and metastasis

Structure of rat monoamine oxidase A and its specific recognitions for substrates and inhibitors

Crystal structure of nitric oxide reductase from denitrifying fungus Fusarium oxysporum

The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins

A new protein complex promoting the assembly of Rad51 filaments

Crystal structure of human D-dopachrome tautomerase, a homologue of macrophage migration inhibitory factor, at 1.54 A resolution

Escherichia coli positive regulator OmpR has a large loop structure at the putative RNA polymerase interaction site

The cytoplasmic coiled-coil mediates cooperative gating temperature sensitivity in the voltage-gated H(+) channel Hv1

Dynamic nature of disulphide bond formation catalysts revealed by crystal structures of DsbB

Crystal Structure of the Cytoplasmic Phosphatase and Tensin Homolog (PTEN)-like Region of Ciona intestinalis Voltage-sensing Phosphatase Provides Insight into Substrate Specificity and Redox Regulation of the Phosphoinositide Phosphatase Activity

Ribosomal protein S7: a new RNA-binding motif with structural similarities to a DNA architectural factor

Crystal structure of mammalian alpha1,6-fucosyltransferase, FUT8

High-resolution crystal structure of beta2-microglobulin formed at pH 7.0

Crystal structure of the hemolytic lectin CEL-III isolated from the marine invertebrate Cucumaria echinata: implications of domain structure for its membrane pore-formation mechanism

Crystallographic Analysis Reveals Octamerization of Viroplasm Matrix Protein P9-1 of Rice Black Streaked Dwarf Virus

Recombinant mammalian tubulin polyglutamylase TTLL7 performs both initiation and elongation of polyglutamylation on beta-tubulin through a random sequential pathway

Structure of human erythrocyte NADH-cytochrome b5 reductase.

Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source

Entropic stabilization of the tryptophan synthase alpha-subunit from a hyperthermophile, Pyrococcus furiosus. X-ray analysis and calorimetry

Transcapsidation and the Conserved Interactions of Two Major Structural Proteins of a Pair of Phytoreoviruses Confirm the Mechanism of Assembly of the Outer Capsid Layer

Crystal structure of 1-aminocyclopropane-1-carboxylate deaminase from Hansenula saturnus

Lipocalin 2 bolsters innate and adaptive immune responses to blood-stage malaria infection by reinforcing host iron metabolism

Structural evolution of reoviridae revealed by oryzavirus in acquiring the second capsid shell.

Conformation of amyloid fibrils of beta2-microglobulin probed by tryptophan mutagenesis

Magnesium(II) and zinc(II)-protoporphyrin IX's stabilize the lowest oxygen affinity state of human hemoglobin even more strongly than deoxyheme

Matching the crystallographic structure of ribosomal protein S7 to a three-dimensional model of the 16S ribosomal RNA

Structure and thermodynamics of the extraordinarily stable molten globule state of canine milk lysozyme

Structural basis for the assembly of the Ragulator-Rag GTPase complex

Crystal structure of bovine lipoyltransferase in complex with lipoyl-AMP

Molecular cloning of human D-dopachrome tautomerase cDNA: N-terminal proline is essential for enzyme activation

Crystal structure of human T-protein of glycine cleavage system at 2.0 A resolution and its implication for understanding non-ketotic hyperglycinemia

A Structural Determinant for the Control of PIP2 Sensitivity in G Protein-gated Inward Rectifier K+ Channels

The host-binding domain of the P2 phage tail spike reveals a trimeric iron-binding structure

Orexin-A is composed of a highly conserved C-terminal and a specific, hydrophilic N-terminal region, revealing the structural basis of specific recognition by the orexin-1 receptor

The crystal structures of semi-synthetic aequorins

Crystallization and preliminary X-ray diffraction analysis of recombinant hepatitis E virus-like particle.

Crystal structure analysis of the translation factor RF3 (release factor 3)

Viroplasm matrix protein Pns9 from rice gall dwarf virus forms an octameric cylindrical structure

Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase