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List of works by Jian Ren

A Cisplatin Derivative Tetra-Pt(bpy) as an Oncotherapeutic Agent for Targeting ALT Cancer

scientific article

A summary of computational resources for protein phosphorylation.

scientific article published on September 2010

A systematic simulation of the effect of salicylic acid on sphingolipid metabolism.

scientific article

An integrated overview of spatiotemporal organization and regulation in mitosis in terms of the proteins in the functional supercomplexes.

scientific article

CPLA 1.0: an integrated database of protein lysine acetylation ⬇️

scientific article published on November 8, 2010

CPLM: a database of protein lysine modifications.

scientific article

Comprehensive and reliable phosphorylation site mapping of individual phosphoproteins by combination of multiple stage mass spectrometric analysis with a target-decoy database search.

scientific article published in July 2009

Computational analysis of phosphoproteomics: progresses and perspectives.

scientific article

DOG 1.0: illustrator of protein domain structures

scientific article published on 01 February 2009

DeepOMe: A Web Server for the Prediction of 2'-O-Me Sites Based on the Hybrid CNN and BLSTM Architecture

scientific article published on 14 May 2021

DeepPhagy: a deep learning framework for quantitatively measuring autophagy activity in Saccharomyces cerevisiae

scientific article published on 20 June 2019

Expression and regulation of long noncoding RNAs during the osteogenic differentiation of periodontal ligament stem cells in the inflammatory microenvironment.

scientific article published on 25 October 2017

Firmiana: towards a one-stop proteomic cloud platform for data processing and analysis.

scientific article

GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy

scientific article

GPS 2.1: enhanced prediction of kinase-specific phosphorylation sites with an algorithm of motif length selection.

scientific article

GPS-ARM: computational analysis of the APC/C recognition motif by predicting D-boxes and KEN-boxes

scientific article

GPS-Lipid: a robust tool for the prediction of multiple lipid modification sites

scientific article published on 16 June 2016

GPS-MBA: computational analysis of MHC class II epitopes in type 1 diabetes

scientific article

GPS-PUP: computational prediction of pupylation sites in prokaryotic proteins

scientific article published on 18 August 2011

GPS-SNO: computational prediction of protein S-nitrosylation sites with a modified GPS algorithm

scientific article

GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs.

scientific article

Genome-Wide Identification of a Methylation Gene Panel as a Prognostic Biomarker in Nasopharyngeal Carcinoma

article

IBS: an illustrator for the presentation and visualization of biological sequences

scientific article published on 10 June 2015

Image-driven classification of functioning and nonfunctioning pituitary adenoma by deep convolutional neural networks

scientific article published on 14 May 2021

MiCroKiTS 4.0: a database of midbody, centrosome, kinetochore, telomere and spindle

scientific article

MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore

scientific article published on 25 September 2009

PhosSNP for systematic analysis of genetic polymorphisms that influence protein phosphorylation

scientific article

Proteome-wide prediction of PKA phosphorylation sites in eukaryotic kingdom.

scientific article published on 10 October 2008

RPFdb: a database for genome wide information of translated mRNA generated from ribosome profiling

scientific article

RPS: a comprehensive database of RNAs involved in liquid-liquid phase separation

scientific article published on 01 January 2022

Reconfiguring phosphorylation signaling by genetic polymorphisms affects cancer susceptibility.

scientific article published on 26 February 2015

SPENCER: a comprehensive database for small peptides encoded by noncoding RNAs in cancer patients

scientific article published on 01 January 2022

Single-base mapping of m6A by an antibody-independent method

scientific article published on 03 July 2019

Systematic analysis of protein phosphorylation networks from phosphoproteomic data

scientific article

Systematic analysis of the Plk-mediated phosphoregulation in eukaryotes.

scientific article published on 31 July 2012

Systematic analysis of the in situ crosstalk of tyrosine modifications reveals no additional natural selection on multiply modified residues.

scientific article

Systematic characterization of small RNAome during zebrafish early developmental stages.

scientific article

Systematic study of protein sumoylation: Development of a site-specific predictor of SUMOsp 2.0

article

Towards a better understanding of the novel avian-origin H7N9 influenza A virus in China

scientific article published on January 2013

UUCD: a family-based database of ubiquitin and ubiquitin-like conjugation

scientific article

VirusMap: A visualization database for the influenza A virus

scientific article published on 29 April 2017

dbPPT: a comprehensive database of protein phosphorylation in plants.

scientific article

m6AVar: a database of functional variants involved in m6A modification

scientific article published on 3 October 2017

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