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List of works by Cheng Zhang

A genome-wide transcriptomic analysis of protein-coding genes in human blood cells

scientific article published on 01 December 2019

A pathology atlas of the human cancer transcriptome

scientific article

A subcellular map of the human proteome

scientific article

An Integrated Understanding of the Rapid Metabolic Benefits of a Carbohydrate-Restricted Diet on Hepatic Steatosis in Humans.

scientific article

An atlas of the protein-coding genes in the human, pig, and mouse brain

scientific article published on 01 March 2020

Applications of Genome-Scale Metabolic Models in Biotechnology and Systems Medicine

scientific article

Boosting Natural Killer Cell-Mediated Targeting of Sarcoma Through DNAM-1 and NKG2D

scientific article published on 28 January 2020

Cell Type-Specific Expression of Testis Elevated Genes Based on Transcriptomics and Antibody-Based Proteomics

scientific article published on 29 August 2019

Characterization of heterogeneous redox responses in hepatocellular carcinoma patients using network analysis.

scientific article published on 31 December 2018

Classification of clear cell renal cell carcinoma based on PKM alternative splicing

scientific article published on 19 February 2020

Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients

scientific article published on 01 October 2021

Discovery of KIRREL as a biomarker for prognostic stratification of patients with thin melanoma

Discovery of therapeutic agents for prostate cancer using genome-scale metabolic modeling and drug repositioning

Dysregulated signaling hubs of liver lipid metabolism reveal hepatocellular carcinoma pathogenesis

scientific article published on 23 May 2016

ESS: A Tool for Genome-Scale Quantification of Essentiality Score for Reaction/Genes in Constraint-Based Modeling

article

Elucidating the Reprograming of Colorectal Cancer Metabolism Using Genome-Scale Metabolic Modeling

scientific article published on 30 July 2019

Expression of PD-L1 and PD-1 in Chemoradiotherapy-Naïve Esophageal and Gastric Adenocarcinoma: Relationship With Mismatch Repair Status and Survival

IdealKnock: A framework for efficiently identifying knockout strategies leading to targeted overproduction

scientific article published on 17 February 2016

Improving the phenotype predictions of a yeast genome-scale metabolic model by incorporating enzymatic constraints ⬇️

scientific article published on 03 August 2017

In silico identification of gene amplification targets based on analysis of production and growth coupling

scientific article published on 5 May 2016

In silico profiling of cell growth and succinate production in Escherichia coli NZN111.

scientific article

Integrated Network Analysis Reveals an Association between Plasma Mannose Levels and Insulin Resistance

scientific article published on 21 June 2016

Integration of molecular profiles in a longitudinal wellness profiling cohort

scientific article published on 08 September 2020

Integrative Personal Omics Profiles during Periods of Weight Gain and Loss.

scientific article published on 16 January 2018

Investigating the Combinatory Effects of Biological Networks on Gene Co-expression

scientific article published on 02 May 2016

LIPG-promoted lipid storage mediates adaptation to oxidative stress in breast cancer

scientific article published on 07 February 2019

Logical transformation of genome-scale metabolic models for gene level applications and analysis.

scientific article

MEMOTE for standardized genome-scale metabolic model testing

scientific article published on 01 March 2020

Mature Human White Adipocytes Cultured under Membranes Maintain Identity, Function, and Can Transdifferentiate into Brown-like Adipocytes

scientific article published on 01 April 2019

Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

Metabolic network-based stratification of hepatocellular carcinoma reveals three distinct tumor subtypes

article published in the Proceedings of the National Academy of Sciences of the United States of America

Network analyses identify liver-specific targets for treating liver diseases

scientific article published on 21 August 2017

Personal model-assisted identification of NAD+ and glutathione metabolism as intervention target in NAFLD.

scientific article published on 02 March 2017

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing

scientific article published on 01 April 2020

Pyruvate kinase L/R is a regulator of lipid metabolism and mitochondrial function

scientific article published on 04 January 2019

Reconstruction of genome-scale metabolic model of Yarrowia lipolytica and its application in overproduction of triacylglycerol

Reframed Genome-Scale Metabolic Model to Facilitate Genetic Design and Integration with Expression Data

scientific article

Stereotypic Immune System Development in Newborn Children

article

Systems Biology Approaches to Decipher the Underlying Molecular Mechanisms of Glioblastoma Multiforme

scientific article published in 2021

TCSBN: a database of tissue and cancer specific biological networks

scientific article published on 24 October 2017

The acute effect of metabolic cofactor supplementation: a potential therapeutic strategy against non-alc33oholic fatty liver disease

scientific article published on 01 April 2020

The gut microbiota modulates host amino acid and glutathione metabolism in mice

scientific article published on 16 October 2015

Transcriptome profiling of the interconnection of pathways involved in malignant transformation and response to hypoxia.

scientific article published on 13 April 2018

Understanding the Representative Gut Microbiota Dysbiosis in Metformin-Treated Type 2 Diabetes Patients Using Genome-Scale Metabolic Modeling.

scientific article published on 25 June 2018

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