List of works - Martin Wu

16S rRNA survey revealed complex bacterial communities and evidence of bacterial interference on human adenoids

scientific article published on 31 October 2012

A generation-time effect on the rate of molecular evolution in bacteria.

scientific article

A new brain dopamine-deficient Drosophila and its pharmacological and genetic rescue

scientific article

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

scientific article

A recurring syndrome of accelerated plastid genome evolution in the angiosperm tribe Sileneae (Caryophyllaceae).

scientific article

A simple, fast, and accurate method of phylogenomic inference

scientific article

Accounting for alignment uncertainty in phylogenomics

scientific article

An integrated phylogenomic approach toward pinpointing the origin of mitochondria

scientific article

Comparative genomic analysis of Acanthamoeba endosymbionts highlights the role of amoebae as a 'melting pot' shaping the Rickettsiales evolution

scientific article published on 21 November 2017

Comparative genomics of emerging human ehrlichiosis agents

scientific article

Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control

scientific article

Complete Genome Sequence of the Endosymbiont of Acanthamoeba Strain UWC8, an Amoeba Endosymbiont Belonging to the "Candidatus Midichloriaceae" Family in Rickettsiales

scientific article

Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum

scientific article

Cytonuclear interactions and relaxed selection accelerate sequence evolution in organelle ribosomes

scientific article published on 13 December 2013

Development, diet and dynamism: longitudinal and cross-sectional predictors of gut microbial communities in wild baboons

scientific article

Does adaptive radiation of a host lineage promote ecological diversity of its bacterial communities? A test using gut microbiota of Anolis lizards

scientific article

Enteric pathogens through life stages

scientific article

Genome sequence of Aeromonas hydrophila ATCC 7966T: jack of all trades

scientific article

Genomic heterogeneity and ecological speciation within one subspecies of Bacillus subtilis

scientific article

Genomic insights into an obligate epibiotic bacterial predator: Micavibrio aeruginosavorus ARL-13

scientific article

Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath)

scientific article

Genomic insights into the uncultured genus 'Candidatus Magnetobacterium' in the phylum Nitrospirae

scientific article

Identification of a fourth family of lycopene cyclases in photosynthetic bacteria

scholarly article

Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance

scientific article

Innate immune response and outcome of Clostridium difficile infection are dependent on fecal bacterial composition in the aged host

scientific article published on 22 August 2017

Lactic acid production by Streptococcus thermophilus alters Clostridium difficile infection and in vitro Toxin A production

scientific article

Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901

scientific article

Lineage-dependent ecological coherence in bacteria ⬇️

scientific article published on May 23, 2012

Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote

scientific article

Mapping arm-DNA-binding domain interactions in AraC.

scientific article published in April 2001

Metagenomic analysis reveals a functional signature for biomass degradation by cecal microbiota in the leaf-eating flying squirrel (Petaurista alborufus lena)

scientific article

Microbial genomic trait evolution is dominated by frequent and rare pulsed evolution

scientific article published in 2022

Microbiota alteration is associated with the development of stress-induced despair behavior

scientific article

NtERF32: a non-NIC2 locus AP2/ERF transcription factor required in jasmonate-inducible nicotine biosynthesis in tobacco

scientific article

PhyloCore: A phylogenetic approach to identifying core taxa in microbial communities

scientific article

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2 ⬇️

scientific article published on February 12, 2012

Phylogenomic reconstruction indicates mitochondrial ancestor was an energy parasite

scientific article

Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements

scientific article

Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates

scientific article

Re-evaluating the evidence for a universal genetic boundary among microbial species

scientific article published in 2021

Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene.

scientific article

Seasonal, spatial, and maternal effects on gut microbiome in wild red squirrels

scientific article published on 21 December 2017

Species matter: the role of competition in the assembly of congeneric bacteria

scientific article

Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees

scientific article (publication date: 18 March 2011)

Surprisingly extensive mixed phylogenetic and ecological signals among bacterial Operational Taxonomic Units

scientific article

The Genome Sequence of the Malaria Mosquito Anopheles gambiae

scientific article

The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium

scientific article

The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

scientific article

The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses

scientific article

Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils

scientific article

List of works by Martin Wu

16S rRNA survey revealed complex bacterial communities and evidence of bacterial interference on human adenoids

A generation-time effect on the rate of molecular evolution in bacteria.

A new brain dopamine-deficient Drosophila and its pharmacological and genetic rescue

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

A recurring syndrome of accelerated plastid genome evolution in the angiosperm tribe Sileneae (Caryophyllaceae).

A simple, fast, and accurate method of phylogenomic inference

Accounting for alignment uncertainty in phylogenomics

An integrated phylogenomic approach toward pinpointing the origin of mitochondria

Comparative genomic analysis of Acanthamoeba endosymbionts highlights the role of amoebae as a 'melting pot' shaping the Rickettsiales evolution

Comparative genomics of emerging human ehrlichiosis agents

Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control

Complete Genome Sequence of the Endosymbiont of Acanthamoeba Strain UWC8, an Amoeba Endosymbiont Belonging to the "Candidatus Midichloriaceae" Family in Rickettsiales

Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum

Cytonuclear interactions and relaxed selection accelerate sequence evolution in organelle ribosomes

Development, diet and dynamism: longitudinal and cross-sectional predictors of gut microbial communities in wild baboons

Does adaptive radiation of a host lineage promote ecological diversity of its bacterial communities? A test using gut microbiota of Anolis lizards

Enteric pathogens through life stages

Genome sequence of Aeromonas hydrophila ATCC 7966T: jack of all trades

Genomic heterogeneity and ecological speciation within one subspecies of Bacillus subtilis

Genomic insights into an obligate epibiotic bacterial predator: Micavibrio aeruginosavorus ARL-13

Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath)

Genomic insights into the uncultured genus 'Candidatus Magnetobacterium' in the phylum Nitrospirae

Identification of a fourth family of lycopene cyclases in photosynthetic bacteria

Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance

Innate immune response and outcome of Clostridium difficile infection are dependent on fecal bacterial composition in the aged host

Lactic acid production by Streptococcus thermophilus alters Clostridium difficile infection and in vitro Toxin A production

Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901

Lineage-dependent ecological coherence in bacteria ⬇️

Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote

Mapping arm-DNA-binding domain interactions in AraC.

Metagenomic analysis reveals a functional signature for biomass degradation by cecal microbiota in the leaf-eating flying squirrel (Petaurista alborufus lena)

Microbial genomic trait evolution is dominated by frequent and rare pulsed evolution

Microbiota alteration is associated with the development of stress-induced despair behavior

NtERF32: a non-NIC2 locus AP2/ERF transcription factor required in jasmonate-inducible nicotine biosynthesis in tobacco

PhyloCore: A phylogenetic approach to identifying core taxa in microbial communities

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2 ⬇️

Phylogenomic reconstruction indicates mitochondrial ancestor was an energy parasite

Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements

Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates

Re-evaluating the evidence for a universal genetic boundary among microbial species

Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene.

Seasonal, spatial, and maternal effects on gut microbiome in wild red squirrels

Species matter: the role of competition in the assembly of congeneric bacteria

Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees

Surprisingly extensive mixed phylogenetic and ecological signals among bacterial Operational Taxonomic Units

The Genome Sequence of the Malaria Mosquito Anopheles gambiae

The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium

The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses

Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils