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List of works by Sébastien Gagneux

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Novel Mycobacterium tuberculosis complex isolate from a wild chimpanzee

scientific article published on June 2013
Use of spoligotyping and large sequence polymorphisms to study the population structure of the Mycobacterium tuberculosis complex in a cohort study of consecutive smear-positive tuberculosis cases in The Gambia

scientific article published on 04 February 2009
A role for systems epidemiology in tuberculosis research

scientific article
Large sequence polymorphisms classify Mycobacterium tuberculosis strains with ancestral spoligotyping patterns.

scientific article
Genotypic diversity and drug susceptibility patterns among M. tuberculosis complex isolates from South-Western Ghana

scientific article
Impact of in vitro evolution on antigenic diversity of Mycobacterium bovis bacillus Calmette-Guerin (BCG)

scientific article published on September 6, 2014
Population Genomics of Mycobacterium tuberculosis in Ethiopia Contradicts the Virgin Soil Hypothesis for Human Tuberculosis in Sub-Saharan Africa.

scientific article
Antimicrobial resistance in Mycobacterium tuberculosis: mechanistic and evolutionary perspectives.

scientific article published on 25 March 2017
Evolution of drug resistance in tuberculosis: recent progress and implications for diagnosis and therapy

scientific article
Long-term dominance of Mycobacterium tuberculosis Uganda family in peri-urban Kampala-Uganda is not associated with cavitary disease

scientific article
Reversion of antibiotic resistance in Mycobacterium tuberculosis by spiroisoxazoline SMARt-420.

scientific article
Single nucleotide polymorphisms in Mycobacterium tuberculosis and the need for a curated database

scientific article published on December 21, 2012
Influence of M. tuberculosis lineage variability within a clinical trial for pulmonary tuberculosis

scientific article
Programmatically selected multidrug-resistant strains drive the emergence of extensively drug-resistant tuberculosis in South Africa

scientific article (publication date: 2013)
Emergence of W135 meningococcal meningitis in Ghana

scientific article published in December 2005
Genomic interrogation of ancestral Mycobacterium tuberculosis from south India

scientific article published on 29 September 2007
Risk factors for meningococcal meningitis in northern Ghana

scientific article published on September 1, 2001
Consensus numbering system for the rifampicin resistance-associated rpoB gene mutations in pathogenic mycobacteria.

scientific article published on 21 September 2016
Mycobacterium tuberculosis transmission in a country with low tuberculosis incidence: role of immigration and HIV infection

scientific article published on 23 November 2011
Strain classification of Mycobacterium tuberculosis: congruence between large sequence polymorphisms and spoligotypes.

scientific article published on January 2011
Mycobacterium africanum Is Associated with Patient Ethnicity in Ghana

scientific article
Drug resistance-conferring mutations in Mycobacterium tuberculosis from Madang, Papua New Guinea

scientific article published on 4 September 2012
Old and new selective pressures on Mycobacterium tuberculosis.

scientific article published on 17 August 2011
DNA replication fidelity in Mycobacterium tuberculosis is mediated by an ancestral prokaryotic proofreader.

scientific article published on 20 April 2015
Clonal groupings in serogroup X Neisseria meningitidis

scientific article published on May 2002
Combination of single nucleotide polymorphism and variable-number tandem repeats for genotyping a homogenous population of Mycobacterium tuberculosis Beijing strains in China

scientific article published on 11 January 2012
Evidence for diversifying selection in a set of Mycobacterium tuberculosis genes in response to antibiotic- and nonantibiotic-related pressure.

scientific article published on 28 February 2013
Genetic Diversity in Mycobacterium tuberculosis

scientific article published on January 1, 2013
Genomic epidemiology of multidrug-resistant Mycobacterium tuberculosis during transcontinental spread

scientific article published on 18 January 2015
Does resistance to pyrazinamide accurately indicate the presence of Mycobacterium bovis?

scientific article published on July 2005
Prevalence of fluoroquinolone resistance among tuberculosis patients in Shanghai, China.

scientific article published on 13 April 2009
Survival and sequelae of meningococcal meningitis in Ghana.

scientific article published on December 2001
High-throughput metabolomic analysis predicts mode of action of uncharacterized antimicrobial compounds.

scientific article published in February 2018
Independent large scale duplications in multiple M. tuberculosis lineages overlapping the same genomic region

scientific article
Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase

scientific article published in Scientific Reports
Compensatory evolution drives multidrug-resistant tuberculosis in Central Asia

scientific article published on 30 October 2018
First insights into the phylogenetic diversity of Mycobacterium tuberculosis in Nepal

scientific article
Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues

scientific article published on 01 September 2019
China's tuberculosis epidemic stems from historical expansion of four strains of Mycobacterium tuberculosis

article
TnSeq of Mycobacterium tuberculosis clinical isolates reveals strain-specific antibiotic liabilities.

scientific article published on 5 March 2018
Investigation of the high rates of extrapulmonary tuberculosis in Ethiopia reveals no single driving factor and minimal evidence for zoonotic transmission of Mycobacterium bovis infection

scientific article
Within Host Evolution Selects for a Dominant Genotype of Mycobacterium tuberculosis while T Cells Increase Pathogen Genetic Diversity

scientific article
Lipidomics and genomics of Mycobacterium tuberculosis reveal lineage-specific trends in mycolic acid biosynthesis

scientific article
Prevalence and clinical relevance of helminth co-infections among tuberculosis patients in urban Tanzania

scientific article
Evaluation of customised lineage-specific sets of MIRU-VNTR loci for genotyping Mycobacterium tuberculosis complex isolates in Ghana

scientific article
A New Phylogenetic Framework for the Animal-Adapted Complex

scientific article published on 27 November 2018
In vivo biosynthesis of terpene nucleosides provides unique chemical markers of Mycobacterium tuberculosis infection

scientific article published on April 2015
Genetic diversity of Mycobacterium tuberculosis in Madang, Papua New Guinea.

scientific article published on 14 June 2012
Diversity of Mycobacterium tuberculosis and drug resistance in different provinces of Papua New Guinea

scientific article published on 5 December 2014
Genetic diversification of Neisseria meningitidis during waves of colonization and disease in the meningitis belt of sub-Saharan Africa

scientific article

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