Search filters

List of works by Jan Roelof van der Meer

A cholesterol-free, high-fat diet suppresses gene expression of cholesterol transporters in murine small intestine.

scientific article

A new large-DNA-fragment delivery system based on integrase activity from an integrative and conjugative element

scientific article published on 17 May 2013

An analog to digital converter controls bistable transfer competence of a widespread integrative and conjugative element

scientific article published on 28 July 2020

Angptl4 protects against severe proinflammatory effects of saturated fat by inhibiting fatty acid uptake into mesenteric lymph node macrophages

scientific article

Artificial neural network study of whole-cell bacterial bioreporter response determined using fluorescence flow cytometry

scientific article

Bacterial bioreporter detection of arsenic associated with iron oxides

scientific article published on 01 June 2018

Bacterial community structure of a pesticide-contaminated site and assessment of changes induced in community structure during bioremediation

scientific article

Bacterial transcriptional regulators for degradation pathways of aromatic compounds

scientific article published in September 2004

Bioreporters and biosensors for arsenic detection. Biotechnological solutions for a world-wide pollution problem

scientific article published on 19 September 2012

Bridging the Holistic-Reductionist Divide in Microbial Ecology

scientific article published on 01 January 2019

Burkholderia sartisoli sp. nov., isolated from a polycyclic aromatic hydrocarbon-contaminated soil

scientific article

CORRIGENDUM: Escherichia coli ribose binding protein based bioreporters revisited

scientific article published on 19 December 2014

Cellular variability of RpoS expression underlies subpopulation activation of an integrative and conjugative element

scientific article

Characterisation of microbial communities colonising the hyphal surfaces of arbuscular mycorrhizal fungi

scientific article

Characterisation of the Putative Effector Interaction Site of the Regulatory HbpR Protein from Pseudomonas azelaica by Site-Directed Mutagenesis ⬇️

scientific article published on February 17, 2011

Characterization of an atypical but widespread type IV secretion system for transfer of the integrative and conjugative element (ICE<i>clc</i>) in<i>Pseudomonas putida</i>

scientific article published in 2023

Cloning and characterization of lin genes responsible for the degradation of Hexachlorocyclohexane isomers by Sphingomonas paucimobilis strain B90.

scientific article published on December 2002

Community analysis of ammonia and nitrite oxidizers during start-up of nitritation reactors

scientific article

Compact portable biosensor for arsenic detection in aqueous samples with Escherichia coli bioreporter cells

scientific article published in January 2014

Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds ⬇️

scientific article published on 28 May 2014

Comparison of naphthalene bioavailability determined by whole-cell biosensing and availability determined by extraction with Tenax

scientific article published on 17 July 2008

Complete alanine scanning of the Escherichia coli RbsB ribose binding protein reveals residues important for chemoreceptor signaling and periplasmic abundance

scientific article

Computational redesign of the Escherichia coli ribose-binding protein ligand binding pocket for 1,3-cyclohexanediol and cyclohexanol

scientific article published on 15 November 2019

Design of new promoters and of a dual-bioreporter based on cross-activation by the two regulatory proteins XylR and HbpR.

scientific article published in November 2004

Development of a multistrain bacterial bioreporter platform for the monitoring of hydrocarbon contaminants in marine environments

scientific article published in February 2010

Development of bacteria-based bioassays for arsenic detection in natural waters

scientific article

Development of bioreporter assays for the detection of bioavailability of long-chain alkanes based on the marine bacterium Alcanivorax borkumensis strain SK2.

scientific article published on September 5, 2011

Draft Genome Sequence of Microbacterium foliorum Strain 122 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site

scientific article published on 25 May 2017

Draft Genome Sequence of Plantibacterflavus Strain 251 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site

scientific article published on 27 April 2017

Dynamics of multiple lin gene expression in Sphingomonas paucimobilis B90A in response to different hexachlorocyclohexane isomers

scientific article published on November 2004

Effect of two types of biosurfactants on phenanthrene availability to the bacterial bioreporter Burkholderia sartisoli strain RP037.

scientific article published in January 2010

Enantioselective transformation of alpha-hexachlorocyclohexane by the dehydrochlorinases LinA1 and LinA2 from the soil bacterium Sphingomonas paucimobilis B90A

scientific article

Environmental connectivity controls diversity in soil microbial communities

scientific article published on 22 April 2021

Escherichia [corrected] coli ribose binding protein based bioreporters revisited

scientific article published on 9 July 2014

Examining Chemical Compound Biodegradation at Low Concentrations through Bacterial Cell Proliferation ⬇️

scientific article published on January 31, 2013

Exposure to solute stress affects genome-wide expression but not the polycyclic aromatic hydrocarbon-degrading activity of Sphingomonas sp. strain LH128 in biofilms

scientific article published on 21 September 2012

Generalist hydrocarbon-degrading bacterial communities in the oil-polluted water column of the North Sea.

scientific article

Genetic analysis of phenoxyalkanoic acid degradation in Sphingomonas herbicidovorans MH.

scientific article published on October 2004

Genome-Wide Analysis of Salicylate and Dibenzofuran Metabolism in Sphingomonas Wittichii RW1 ⬇️

scientific article published on August 23, 2012

Genome-wide analysis of Sphingomonas wittichii RW1 behaviour during inoculation and growth in contaminated sand

scientific article

Genome‐wide transposon insertion scanning of environmental survival functions in the polycyclic aromatic hydrocarbon degrading bacterium Sphingomonas wittichii RW1 ⬇️

scientific article published on April 19, 2013

Genomic changes underlying host specialization in the bee gut symbiont Lactobacillus Firm5

scientific article published on 29 May 2019

Genomic islands and the evolution of catabolic pathways in bacteria

scientific article

Genomic islands: tools of bacterial horizontal gene transfer and evolution

scientific article published on 29 October 2008

Gut microbiota facilitates dietary heme-induced epithelial hyperproliferation by opening the mucus barrier in colon

scientific article published on 27 July 2015

Heterologous Expression of Pseudomonas putida Methyl-Accepting Chemotaxis Proteins Yields Escherichia coli Cells Chemotactic to Aromatic Compounds

scientific article published on 31 August 2018

Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1. ⬇️

scholarly article

How can a dual oriT system contribute to efficient transfer of an integrative and conjugative element? ⬇️

scientific article published on May 1, 2011

Identification and physical characterization of the HbpR binding sites of the hbpC and hbpD promoters

scientific article published on June 2002

Identification of opsA, a gene involved in solute stress mitigation and survival in soil, in the polycyclic aromatic hydrocarbon-degrading bacterium Novosphingobium sp. strain LH128.

scientific article published on 21 March 2014

Illuminating the detection chain of bacterial bioreporters

scientific article published in October 2004

Immediate ecotoxicological effects of short-lived oil spills on marine biota

scientific article published on 4 April 2016

Impact of mycelia on the accessibility of fluorene to PAH-degrading bacteria

scientific article

Improved statistical analysis of low abundance phenomena in bimodal bacterial populations

scientific article

Information from single-cell bacterial biosensors: what is it good for?

scientific article

Life history analysis of integrative and conjugative element activation in growing microcolonies of Pseudomonas

scientific article published on 24 January 2014

Local Environmental Factors Drive Divergent Grassland Soil Bacterial Communities in the Western Swiss Alps

scientific article

Measurement of biologically available naphthalene in gas and aqueous phases by use of a Pseudomonas putida biosensor

scientific article published on January 2004

Mechanistic Modeling of Genetic Circuits for ArsR Arsenic Regulation

scientific article published on 19 February 2017

Meta-scale mountain grassland observatories uncover commonalities as well as specific interactions among plant and non-rhizosphere soil bacterial communities.

scientific article

Miniaturized and integrated whole cell living bacterial sensors in field applicable autonomous devices

scientific article published on 11 January 2017

Mutation analysis of the different tfd genes for degradation of chloroaromatic compounds in Ralstonia eutropha JMP134.

scientific article published on 16 December 2003

Novel use of a whole cell E. coli bioreporter as a urinary exposure biomarker

scientific article published in January 2009

Oit1/Fam3D, a gut-secreted protein displaying nutritional status-dependent regulation.

scientific article

Optimization of preservation conditions of As (III) bioreporter bacteria

scientific article published on 6 February 2009

Orchestrated long-distance gene activation by a ParB-like BisD-CTP DNA clamp in low-frequency transfer competence development in Pseudomonas putida

scientific article published on 16 September 2024

Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: evidence for horizontal gene transfer

scientific article

Physiological and transcriptome changes induced by Pseudomonas putida acquisition of an integrative and conjugative element

scientific article published on 3 April 2018

Predicting spatial patterns of soil bacteria under current and future environmental conditions

scientific article published on 12 March 2021

Probing chemotaxis activity in Escherichia coli using fluorescent protein fusions

scientific article published on 07 March 2019

Prospects for harnessing biocide resistance for bioremediation and detoxification

scientific article published on 01 May 2018

Purification and characterization of two enantioselective alpha-ketoglutarate-dependent dioxygenases, RdpA and SdpA, from Sphingomonas herbicidovorans MH.

scientific article

Rapid detection of microbiota cell type diversity using machine-learned classification of flow cytometry data

scientific article published on 15 July 2020

Reproducible Propagation of Species-Rich Soil Bacterial Communities Suggests Robust Underlying Deterministic Principles of Community Formation

scientific article published on 30 March 2022

Saturated fat stimulates obesity and hepatic steatosis and affects gut microbiota composition by an enhanced overflow of dietary fat to the distal intestine.

scientific article published on 14 June 2012

Seasonal fluctuations of bacterial community diversity in agricultural soil and experimental validation by laboratory disturbance experiments

scientific article published on 25 November 2007

Sequencing and characterizing the genome of Estrella lausannensis as an undergraduate project: training students and biological insights

scientific article published on 19 February 2015

Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas

scholarly article

Subcellular Localization Defects Characterize Ribose-Binding Mutant Proteins with New Ligand Properties in Escherichia coli

scientific article published in 2022

The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand

scientific article

The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties

scientific article

Towards improved biomonitoring tools for an intensified sustainable multi-use environment

scientific article

Toxicity of triclosan, penconazole and metalaxyl on Caulobacter crescentus and a freshwater microbial community as assessed by flow cytometry

scientific article

Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13.

scientific article

Transient Replication in Specialized Cells Favors Transfer of an Integrative and Conjugative Element.

scientific article

Tunable reporter signal production in feedback-uncoupled arsenic bioreporters

scientific article published on 15 January 2013

Ultrasensitive reporter protein detection in genetically engineered bacteria

scientific article

Use of flow cytometric methods for single-cell analysis in environmental microbiology

scientific article published on 16 June 2008

Where microbiology meets microengineering: design and applications of reporter bacteria

scientific article published on July 2010

Whole-cell living biosensors--are they ready for environmental application?

scientific article

Paulina is supported by:

About Paulina

Help