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List of works by Filipe Pereira

A framework for the development of STR genotyping in domestic animal species: characterization and population study of 12 canine X-chromosome loci

scientific article published in January 2010

A method to assemble DNA fragments mimicking junctions of transgenic elements: Application to the AquAdvantage salmon

A multiplex PCR assay for identification of the red fox (Vulpes vulpes) using the mitochondrial ribosomal RNA genes

article

A multiplex primer extension assay for the rapid identification of paternal lineages in domestic goat (Capra hircus): Laying the foundations for a detailed caprine Y chromosome phylogeny

scientific article published on 10 September 2008

A new autosomal STR multiplex for canine genotyping

A new autosomal STR nineplex for canine identification and parentage testing

scientific article published in January 2009

A paradigm for virus-host coevolution: sequential counter-adaptations between endogenous and exogenous retroviruses

scientific article (publication date: November 2007)

A proposal for standardization of transgenic reference sequences used in food forensics

scientific article published on 02 May 2017

Actinobacteria Isolated From : A Source of New Bioactive Compounds

scientific article published on 09 April 2019

Amphibians on the hotspot: Molecular biology and conservation in the South American Atlantic Rainforest

scientific article published on 23 October 2019

Analysis of inter-specific mitochondrial DNA diversity for accurate species identification

Association of G-quadruplex forming sequences with human mtDNA deletion breakpoints.

scientific article

Biodegradation of mono-, di- and trifluoroacetate by microbial cultures with different origins.

scientific article published on 26 August 2017

CoV2ID: Detection and Therapeutics Oligo Database for SARS-CoV-2

scientific article published on 26 April 2020

Data for Y-chromosome haplotypes defined by 17 STRs (AmpFLSTR Yfiler) in two Tunisian Berber communities

scientific article

Digital PCR methods improve detection sensitivity and measurement precision of low abundance mtDNA deletions.

scientific article published on 28 April 2016

Diversity and Bioactive Potential of Actinobacteria Isolated from a Coastal Marine Sediment in Northern Portugal

scientific article published on 30 October 2020

EbolaID: An Online Database of Informative Genomic Regions for Ebola Identification and Treatment

scientific article published on 21 July 2016

Epistatic interactions modulate the evolution of mammalian mitochondrial respiratory complex components

scientific article

Evidence for variable selective pressures at a large secondary structure of the human mitochondrial DNA control region

scientific article

Evolution of the NET (NocA, Nlz, Elbow, TLP-1) protein family in metazoans: insights from expression data and phylogenetic analysis

scientific article

Forensic genetics and genomics: Much more than just a human affair

scientific article published on 21 September 2017

Genetic and DNA-Based Techniques

Genetic profiles and sex identification of found-dead wolves determined by the use of an 11-loci PCR multiplex

Genetic signatures of a Mediterranean influence in Iberian Peninsula sheep husbandry

scientific article published on 3 May 2006

Identification of mtDNA lineages of Sus scrofa by multiplex single base extension for the authentication of processed food products

scientific article

Identification of plant species using variable length chloroplast DNA sequences

article

Identification of species by multiplex analysis of variable-length sequences

scientific article (publication date: 4 October 2010)

Metagenomic Composition Analysis of an Ancient Sequenced Polar Bear Jawbone from Svalbard

article

MitoBreak: the mitochondrial DNA breakpoints database

scientific article

Mitochondrial DNA deletions are associated with non-B DNA conformations

scientific article

Mitochondrial DNA rearrangements in health and disease--a comprehensive study

scientific article published on 18 October 2013

Mitochondrial DNA variation of domestic sheep (Ovis aries) in Kenya

scientific article

Mitochondrial lineages reveal intense gene flow between Iberian wild boars and South Iberian pig breeds

scientific article published on 7 June 2011

MtDNA diversity among four Portuguese autochthonous dog breeds: a fine-scale characterisation

scientific article

New Method for the Simultaneous Identification of Cow, Sheep, Goat, and Water Buffalo in Dairy Products by Analysis of Short Species-Specific Mitochondrial DNA Targets

article

New insights into the phylogeny and worldwide dispersion of two closely related nematode species, Bursaphelenchus xylophilus and Bursaphelenchus mucronatus ⬇️

scientific article

Opportunistically acquired evidence is unsuitable data to model fox (Vulpes vulpes) distribution in Tasmania

article

Origin and Spread of Goat Pastoralism

article

Quantification of Neurospora crassa mitochondrial DNA using quantitative real-time PCR

scientific article published on 09 April 2020

Relative Y-STR mutation rates estimated from the variance inside SNP defined lineages

article

Reply to Sarre et al. “Defining specificity in DNA detection of wildlife”

Revealing the history of sheep domestication using retrovirus integrations

scientific article

SPInDel: a multifunctional workbench for species identification using insertion/deletion variants

scientific article

Splice-Break: exploiting an RNA-seq splice junction algorithm to discover mitochondrial DNA deletion breakpoints and analyses of psychiatric disorders.

scientific article published in June 2019

The HIV oligonucleotide database (HIVoligoDB).

scientific article

The dispersion and detection patterns of mtDNA-assigned red fox Vulpes vulpes scats in Tasmania are anomalous

scientific article

The mitochondrial genome of the pinewood nematode (Bursaphelenchus xylophilus) lineage introduced in Europe.

scientific article

The mitogenomic phylogeny of the Elasmobranchii (Chondrichthyes).

scientific article

The risks of using "species-specific" PCR assays in wildlife research: The case of red fox (Vulpes vulpes) identification in Tasmania

scientific article published on 28 March 2014

Tracing the history of goat pastoralism: new clues from mitochondrial and Y chromosome DNA in North Africa.

scientific article published on 3 September 2009

Trends in anecdotal fox sightings in Tasmania accounted for by psychological factors.

scientific article published on 6 April 2017

Usefulness of microchip electrophoresis for the analysis of mitochondrial DNA in forensic and ancient DNA studies

scientific article published on December 2006

mtDNA lineages in two Tunisian Berber communities: Comparing diversities between villages and towns

scholarly article by S. Frigi et al published April 2006 in International Congress Series

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