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List of works by Matthieu Barret

Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens

scientific article published on 4 September 2017

Characterization of relative abundance of lactic acid bacteria species in French organic sourdough by cultural, qPCR and MiSeq high-throughput sequencing methods.

scientific article published on 29 July 2016

Characterization of the SPI-1 and Rsp type three secretion systems in Pseudomonas fluorescens F113.

scientific article published on 25 February 2013

Crop Residues in Wheat-Oilseed Rape Rotation System: a Pivotal, Shifting Platform for Microbial Meetings

scientific article published on 05 March 2019

Differences in resource use lead to coexistence of seed-transmitted microbial populations

scientific article published on 30 April 2019

Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms.

scientific article published on 11 April 2016

Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat ⬇️

scientific article published on 30 August 2019

Distribution and diversity of bacterial secretion systems across metagenomic datasets

scientific article

Effect of wheat roots infected with the pathogenic fungus Gaeumannomyces graminis var. tritici on gene expression of the biocontrol bacterium Pseudomonas fluorescens Pf29Arp

scientific article

Emergence shapes the structure of the seed microbiota

scientific article

Genome sequence of the biocontrol strain Pseudomonas fluorescens F113.

scientific article published on March 2012

Genomic analysis of the biocontrol strain Pseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots

scientific article published on 10 April 2013

Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered

scientific article published on 07 April 2011

Identification of novel phytase genes from an agricultural soil-derived metagenome

scientific article

Maternal effects and environmental filtering shape seed fungal communities in oak trees

scientific article published on 3 July 2019

Maternal effects shape the seed mycobiome in Quercus petraea

scientific article published on 20 December 2020

Molecular evolution of LysR-type transcriptional regulation in Pseudomonas aeruginosa.

scientific article

Pairwise Transcriptomic Analysis of the Interactions Between the Ectomycorrhizal Fungus Laccaria bicolor S238N and Three Beneficial, Neutral and Antagonistic Soil Bacteria

article

Plant microbiota affects seed transmission of phytopathogenic microorganisms

scientific article published on 5 February 2016

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Seed microbiota revealed by a large‐scale meta‐analysis including 50 plant species

scientific article published in 2022

Subtilomycin: a new lantibiotic from Bacillus subtilis strain MMA7 isolated from the marine sponge Haliclona simulans.

scientific article published on 3 June 2013

Terroir is a key driver of seed-associated microbial assemblages.

scientific article

The SPI-1-like Type III secretion system: more roles than you think

scientific article

The plant pathogenic fungus Gaeumannomyces graminis var. tritici improves bacterial growth and triggers early gene regulations in the biocontrol strain Pseudomonas fluorescens Pf29Arp.

scientific article published in January 2009

The severity of nonalcoholic fatty liver disease is associated with gut dysbiosis and shift in the metabolic function of the gut microbiota

scientific article published on 24 November 2015

rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing

scientific article published on 29 July 2019

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