List of works - Thomas M. Schmidt

A framework for human microbiome research

scientific article

A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community

scientific article

A little O2 may go a long way in structuring the GI microbiome

scientific article published on 27 September 2014

A new version of the RDP (Ribosomal Database Project).

scientific article

A systems approach to model natural variation in reactive properties of bacterial ribosomes

scientific article

Acetogenesis from H2 plus CO2 by spirochetes from termite guts

scientific article published in January 1999

Agriculture's impact on microbial diversity and associated fluxes of carbon dioxide and methane.

scientific article

Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals

scientific article

Antibiotic-associated diarrhea accompanied by large-scale alterations in the composition of the fecal microbiota

scientific article published on March 2004

Application of Traditional and Phylogenetically Based Comparative Methods to Test for a Trade-off in Bacterial Growth Rate at Low versus High Substrate Concentration

scientific article published on 01 October 1999

Application of a neutral community model to assess structuring of the human lung microbiome

scientific article

Archaeal nucleic acids in picoplankton from great lakes on three continents

scientific article (publication date: August 2003)

Bacterial communities in Malagasy soils with differing levels of disturbance affecting botanical diversity

scientific article published on 20 January 2014

Butyrogenic bacteria after acute graft-versus-host disease (GVHD) are associated with the development of steroid-refractory GVHD

scientific article published on 01 October 2019

Changes in Synechococcus population size and cellular ribosomal RNA content in response to predation and nutrient limitation.

scientific article published on 28 May 2004

Changes in the gut microbiome and fermentation products concurrent with enhanced longevity in acarbose-treated mice.

scientific article published on 13 June 2019

Colonization of the cecal mucosa by Helicobacter hepaticus impacts the diversity of the indigenous microbiota

scientific article published in October 2005

Comparison of the respiratory microbiome in healthy nonsmokers and smokers

scientific article published on May 2013

Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea

scientific article

Defining linkages between the GSC and NSF's LTER program: how the Ecological Metadata Language (EML) relates to GCDML and other outcomes.

scientific article published on June 2008

Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium

scientific article published on 09 May 2013

Differences in codon bias cannot explain differences in translational power among microbes

scientific article

Distribution of the tfdA Gene in Soil Bacteria That Do Not Degrade 2,4-Dichlorophenoxyacetic Acid (2,4-D)

article

Diversifying and perennializing plants in agroecosystems alters retention of new<scp>C</scp>and<scp>N</scp>from crop residues

scientific article published in 2023

Diversity and dynamics of microbial communities in soils from agro-ecosystems

scientific article

Dynamics of Human Gut Microbiota and Short-Chain Fatty Acids in Response to Dietary Interventions with Three Fermentable Fibers

scientific article published on 29 January 2019

Evidence for a bacterial mechanism for group-specific social odors among hyenas

scientific article

Evolution of competitive fitness in experimental populations of E. coli: what makes one genotype a better competitor than another?

scientific article published on 01 January 1998

Exploiting rRNA operon copy number to investigate bacterial reproductive strategies

scientific article published on 12 September 2016

Farming for Ecosystem Services: An Ecological Approach to Production Agriculture

scientific article

Functional gene differences in soil microbial communities from conventional, low-input, and organic farmlands

scientific article

Fundamentals of microbial community resistance and resilience

scientific article

Genomic and physiological characterization of the Verrucomicrobia isolate Diplosphaera colitermitum gen. nov., sp. nov., reveals microaerophily and nitrogen fixation genes

scientific article

Gut microbiome-derived metabolites modulate intestinal epithelial cell damage and mitigate graft-versus-host disease

scientific article

Identifying and removing artificial replicates from 454 pyrosequencing data.

scientific article

Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria

scientific article

Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria

scientific article

Life history implications of rRNA gene copy number in Escherichia coli

scientific article

Methods for Characterizing Microbial Communities Associated with the Human Body

Molecular characterization of Cyclospora-like organisms from baboons.

scientific article

Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals

scientific article published on 6 August 2015

Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis

scientific article published on 04 March 2013

Neonatal acquisition of Clostridia species protects against colonization by bacterial pathogens.

scientific article published on April 2017

New strategies for cultivation and detection of previously uncultured microbes

scientific article published on August 2004

Nucleic acid content of Synechococcus spp. during growth in continuous light and light/dark cycles

article by Lepp PW et al published 3 August 1998 in Archives of Microbiology

Overview of the gastrointestinal microbiota

scientific article published on January 2008

Perennial grasslands enhance biodiversity and multiple ecosystem services in bioenergy landscapes

scientific article published on 13 January 2014

Performance of the translational apparatus varies with the ecological strategies of bacteria

scientific article published on 2 February 2007

Phylogenetic characterization and prevalence of "Spirobacillus cienkowskii," a red-pigmented, spiral-shaped bacterial pathogen of freshwater Daphnia species

scientific article

Rates and consequences of recombination between rRNA operons

scientific article

Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation

scientific article

Role of Rhodobacter sp. strain PS9, a purple non-sulfur photosynthetic bacterium isolated from an anaerobic swine waste lagoon, in odor remediation

scientific article

Shallow breathing: bacterial life at low O(2).

scientific article published on March 2013

Structure, function and diversity of the healthy human microbiome

scientific article

Studying the Enteric Microbiome in Inflammatory Bowel Diseases: Getting through the Growing Pains and Moving Forward

scientific article published on 05 July 2011

Symbiotic bacteria appear to mediate hyena social odors

scientific article

Systematic artifacts in metagenomes from complex microbial communities

scientific article published on 9 July 2009

The SwissFEL soft X-ray free-electron laser beamline: Athos

scientific article published on 21 June 2019

The agent of bacillary angiomatosis. An approach to the identification of uncultured pathogens.

scientific article published in December 1990

The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation

scientific article

The effect of natural selection on the performance of maximum parsimony

scientific article

The first cellular bioenergetic process: Primitive generation of a proton-motive force

scientific article published on 01 October 1991

The physiology and ecological implications of efficient growth.

scientific article published on 9 January 2015

Vertebrate Hosts as Islands: Dynamics of Selection, Immigration, Loss, Persistence, and Potential Function of Bacteria on Salamander Skin

scientific article published on 16 March 2016

Vitamin A or Zymosan Pretreatment Attenuates α-Naphthylisothiocyanate-Induced Liver Injury

scientific article published on 01 September 1995

rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea

scientific article published on 23 October 2008

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development.

scientific article

List of works by Thomas M. Schmidt

A framework for human microbiome research

A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community

A little O2 may go a long way in structuring the GI microbiome

A new version of the RDP (Ribosomal Database Project).

A systems approach to model natural variation in reactive properties of bacterial ribosomes

Acetogenesis from H2 plus CO2 by spirochetes from termite guts

Agriculture's impact on microbial diversity and associated fluxes of carbon dioxide and methane.

Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals

Antibiotic-associated diarrhea accompanied by large-scale alterations in the composition of the fecal microbiota

Application of Traditional and Phylogenetically Based Comparative Methods to Test for a Trade-off in Bacterial Growth Rate at Low versus High Substrate Concentration

Application of a neutral community model to assess structuring of the human lung microbiome

Archaeal nucleic acids in picoplankton from great lakes on three continents

Bacterial communities in Malagasy soils with differing levels of disturbance affecting botanical diversity

Butyrogenic bacteria after acute graft-versus-host disease (GVHD) are associated with the development of steroid-refractory GVHD

Changes in Synechococcus population size and cellular ribosomal RNA content in response to predation and nutrient limitation.

Changes in the gut microbiome and fermentation products concurrent with enhanced longevity in acarbose-treated mice.

Colonization of the cecal mucosa by Helicobacter hepaticus impacts the diversity of the indigenous microbiota

Comparison of the respiratory microbiome in healthy nonsmokers and smokers

Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea

Defining linkages between the GSC and NSF's LTER program: how the Ecological Metadata Language (EML) relates to GCDML and other outcomes.

Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium

Differences in codon bias cannot explain differences in translational power among microbes

Distribution of the tfdA Gene in Soil Bacteria That Do Not Degrade 2,4-Dichlorophenoxyacetic Acid (2,4-D)

Diversifying and perennializing plants in agroecosystems alters retention of new<scp>C</scp>and<scp>N</scp>from crop residues

Diversity and dynamics of microbial communities in soils from agro-ecosystems

Dynamics of Human Gut Microbiota and Short-Chain Fatty Acids in Response to Dietary Interventions with Three Fermentable Fibers

Evidence for a bacterial mechanism for group-specific social odors among hyenas

Evolution of competitive fitness in experimental populations of E. coli: what makes one genotype a better competitor than another?

Exploiting rRNA operon copy number to investigate bacterial reproductive strategies

Farming for Ecosystem Services: An Ecological Approach to Production Agriculture

Functional gene differences in soil microbial communities from conventional, low-input, and organic farmlands

Fundamentals of microbial community resistance and resilience

Genomic and physiological characterization of the Verrucomicrobia isolate Diplosphaera colitermitum gen. nov., sp. nov., reveals microaerophily and nitrogen fixation genes

Gut microbiome-derived metabolites modulate intestinal epithelial cell damage and mitigate graft-versus-host disease

Identifying and removing artificial replicates from 454 pyrosequencing data.

Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria

Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria

Life history implications of rRNA gene copy number in Escherichia coli

Methods for Characterizing Microbial Communities Associated with the Human Body

Molecular characterization of Cyclospora-like organisms from baboons.

Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals

Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis

Neonatal acquisition of Clostridia species protects against colonization by bacterial pathogens.

New strategies for cultivation and detection of previously uncultured microbes

Nucleic acid content of Synechococcus spp. during growth in continuous light and light/dark cycles

Overview of the gastrointestinal microbiota

Perennial grasslands enhance biodiversity and multiple ecosystem services in bioenergy landscapes

Performance of the translational apparatus varies with the ecological strategies of bacteria

Phylogenetic characterization and prevalence of "Spirobacillus cienkowskii," a red-pigmented, spiral-shaped bacterial pathogen of freshwater Daphnia species

Rates and consequences of recombination between rRNA operons

Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation

Role of Rhodobacter sp. strain PS9, a purple non-sulfur photosynthetic bacterium isolated from an anaerobic swine waste lagoon, in odor remediation

Shallow breathing: bacterial life at low O(2).

Structure, function and diversity of the healthy human microbiome

Studying the Enteric Microbiome in Inflammatory Bowel Diseases: Getting through the Growing Pains and Moving Forward

Symbiotic bacteria appear to mediate hyena social odors

Systematic artifacts in metagenomes from complex microbial communities

The SwissFEL soft X-ray free-electron laser beamline: Athos

The agent of bacillary angiomatosis. An approach to the identification of uncultured pathogens.

The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation

The effect of natural selection on the performance of maximum parsimony

The first cellular bioenergetic process: Primitive generation of a proton-motive force

The physiology and ecological implications of efficient growth.

Vertebrate Hosts as Islands: Dynamics of Selection, Immigration, Loss, Persistence, and Potential Function of Bacteria on Salamander Skin

Vitamin A or Zymosan Pretreatment Attenuates α-Naphthylisothiocyanate-Induced Liver Injury

rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development.