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List of works by Uri Hershberg

AIRR Community Standardized Representations for Annotated Immune Repertoires

Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data

scientific article published in November 2017

An atlas of B-cell clonal distribution in the human body.

scientific article published on 21 August 2017

Anti-chromatin antibodies drive in vivo antigen-specific activation and somatic hypermutation of rheumatoid factor B cells at extrafollicular sites

scientific article published on December 2007

Antigen-receptor degeneracy and immunological paradigms

scientific article published on February 2004

Antiviral response dictated by choreographed cascade of transcription factors.

scientific article

Applying systems-level spectral imaging and analysis to reveal the organelle interactome

scientific article

B cell variable genes have evolved their codon usage to focus the targeted patterns of somatic mutation on the complementarity determining regions

scientific article

Biomedical model fitting and error analysis

scientific article published on 20 September 2011

Computational Evaluation of B-Cell Clone Sizes in Bulk Populations

Computational Image Analysis Reveals Intrinsic Multigenerational Differences between Anterior and Posterior Cerebral Cortex Neural Progenitor Cells

scientific article

Conserved variation: identifying patterns of stability and variability in BCR and TCR V genes with different diversity and richness metrics

scientific article published on 4 June 2013

Detecting selection in immunoglobulin sequences

scientific article

Differences in potential for amino acid change after mutation reveals distinct strategies for kappa and lambda light-chain variation

scholarly article

Discrimination of germline V genes at different sequencing lengths and mutational burdens: A new tool for identifying and evaluating the reliability of V gene assignment

scientific article published on 31 October 2015

Establishing a relationship between bacteria in the human gut and complex regional pain syndrome

scientific article published on 20 December 2012

Germline Amino Acid Diversity in B Cell Receptors is a Good Predictor of Somatic Selection Pressures

scientific article

HIV time hierarchy: winning the war while, loosing all the battles

article

High-Throughput Sequencing of Antibody Genes Successfully Identifies Clonal Ig Rearrangements in Multiple Myeloma Patients

article

Human Lymph Nodes Maintain TCF-1 Memory T Cells with High Functional Potential and Clonal Diversity throughout Life

scientific article published on 15 August 2018

Ig gene analysis reveals altered selective pressures on Ig-producing cells in parotid glands of primary Sjögren's syndrome patients

scientific article published on 8 December 2014

ImmuneDB, a Novel Tool for the Analysis, Storage, and Dissemination of Immune Repertoire Sequencing Data

ImmuneDB: a system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data

scientific article

Improved methods for detecting selection by mutation analysis of Ig V region sequences

article

Insight into Rhinovirus-Induced Asthma Exacerbation Using High-Throughput Immunosequencing of B-Cell Repertoires

scholarly article by Yu-Chang Bryan Wu et al published February 2017 in The Journal of Allergy and Clinical Immunology

Lasting antibody responses are mediated by a combination of newly formed and established bone marrow plasma cells drawn from clonally distinct precursors

scientific article

Local BLyS production by T follicular cells mediates retention of high affinity B cells during affinity maturation

scientific article published on 23 December 2013

Persistence and selection of an expanded B-cell clone in the setting of rituximab therapy for Sjögren's syndrome

scientific article published on 11 February 2014

Postext – A Mind for Society

Prokaryotic nucleotide composition is shaped by both phylogeny and the environment

scientific article published on 9 April 2015

Questions of Stochasticity and Control in Immune Repertoires

scholarly article by Gur Yaari et al published September 2018 in Trends in Immunology

Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection.

scientific article

Serine substitutions are linked to codon usage and differ for variable and conserved protein regions

scientific article published on 21 November 2019

T Cell Receptor-induced Nuclear Factor κB (NF-κB) Signaling and Transcriptional Activation Are Regulated by STIM1- and Orai1-mediated Calcium Entry

scientific article published on 29 January 2016

T cell-independent and toll-like receptor-dependent antigen-driven activation of autoreactive B cells

scientific article published on August 2008

TESTING THE TURING TEST — DO MEN PASS IT?

Taking advantage: high-affinity B cells in the germinal center have lower death rates, but similar rates of division, compared to low-affinity cells

scientific article published on 16 November 2009

The analysis of clonal expansions in normal and autoimmune B cell repertoires

scientific article (publication date: 5 September 2015)

The immune system and other cognitive systems

Trials and Tribulations with VH Replacement

scientific article published on 30 January 2014

Useful examples and a new model of the immune system

Utilization of HIV-1 envelope V3 to identify X4- and R5-specific Tat and LTR sequence signatures

scientific article published on 3 May 2016

VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements

2016 scientific article

Viral CD8 T cell epitope nucleotide composition shows evidence of short- and long-term evolutionary strategies

scientific article published on 8 November 2014

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