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List of works by Marina Sirota

A Classifier-based approach to identify genetic similarities between diseases

scientific article published on June 2009

A Haystack Heuristic for Autoimmune Disease Biomarker Discovery Using Next-Gen Immune Repertoire Sequencing Data

scientific article

A phenotypic and genomics approach in a multi-ethnic cohort to subtype systemic lupus erythematosus

scientific article published on 29 August 2019

A systematic assessment of linking gene expression with genetic variants for prioritizing candidate targets

scientific article

Author Correction: A phenotypic and genomics approach in a multi-ethnic cohort to subtype systemic lupus erythematosus

scientific article published on 27 February 2020

Autoimmune disease classification by inverse association with SNP alleles

scientific article

B cell exchange across the blood-brain barrier in multiple sclerosis

scientific article

CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction

scientific article

Combined inhibition of atypical PKC and histone deacetylase 1 is cooperative in basal cell carcinoma treatment

scientific article published on 2 November 2017

Comprehensive analysis of normal adjacent to tumor transcriptomes

scientific article published on 20 October 2017

Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease

scientific article

Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants

scientific article

Correction to: Hydroxychloroquine dosing in immune-mediated diseases: implications for patient safety.

scientific article

Cross-tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues

scientific article published on 4 May 2016

Deep phenotyping of Alzheimer's disease leveraging electronic medical records identifies sex-specific clinical associations

scientific article published on 03 February 2022

Discovery and preclinical validation of drug indications using compendia of public gene expression data

scientific article

Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks

Effect of genome and environment on metabolic and inflammatory profiles

scientific article

Environmental influences on reproductive health: the importance of chemical exposures

scientific article

Evolution of genes and genomes on the Drosophila phylogeny

scientific article

Expression-based genome-wide association study links the receptor CD44 in adipose tissue with type 2 diabetes

scientific article

Germline-encoded neutralization of a Staphylococcus aureus virulence factor by the human antibody repertoire

scientific article

Hydroxychloroquine dosing in immune-mediated diseases: implications for patient safety

scientific article

Identification of Alpha-Adrenergic Agonists as Potential Therapeutic Agents for Dermatomyositis through Drug-Repurposing Using Public Expression Datasets

scientific article published on 11 March 2016

Identifying a high fraction of the human genome to be under selective constraint using GERP++.

scientific article

Immunoglobulin class-switched B cells form an active immune axis between CNS and periphery in multiple sclerosis.

scientific article

Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy

Non-synonymous and synonymous coding SNPs show similar likelihood and effect size of human disease association

scientific article

Precision annotation of digital samples in NCBI's gene expression omnibus

scientific article published on 19 September 2017

Productive common light chain libraries yield diverse panels of high affinity bispecific antibodies.

scientific article published on 11 December 2017

Protected Health Information filter (Philter): accurately and securely de-identifying free-text clinical notes

scientific article published on 14 April 2020

Relating hepatocellular carcinoma tumor samples and cell lines using gene expression data in translational research

scientific article

Reversal of cancer gene expression correlates with drug efficacy and reveals therapeutic targets

scientific article

Sex differences in disease risk from reported genome-wide association study findings

scientific article published on 20 August 2011

Sex-Stratified Single-Cell RNA-Seq Analysis Identifies Sex-Specific and Cell Type-Specific Transcriptional Responses in Alzheimer's Disease Across Two Brain Regions

scientific article published on 20 October 2021

Synergistic drug combinations from electronic health records and gene expression

scientific article published on 9 December 2016

Systematic pan-cancer analysis of tumour purity

scientific article published on 4 December 2015

Ten years of pathway analysis: current approaches and outstanding challenges

scientific article (publication date: 2012)

The role of bioinformatics in studying rheumatic and autoimmune disorders

scientific article published on 21 June 2011

Towards personalized medicine in maternal and child health: integrating biologic and social determinants

scientific article published on 26 May 2020

Transcriptomic analysis of immune cells in a multi-ethnic cohort of systemic lupus erythematosus patients identifies ethnicity- and disease-specific expression signatures

scientific article published on 21 April 2021

Transmission distortion in Crohn's disease risk gene ATG16L1 leads to sex difference in disease association

scientific article

Transplantomics: Toward Precision Medicine in Transplantation Research

scientific article published on 25 January 2017

Using health-system-wide data to understand hepatitis B virus prophylaxis and reactivation outcomes in patients receiving rituximab

scientific article

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