List of works - Manuel Ferrer

A purple acidophilic di-ferric DNA ligase from Ferroplasma

scholarly article

Acidiplasma aeolicum gen. nov., sp. nov., a euryarchaeon of the family Ferroplasmaceae isolated from a hydrothermal pool, and transfer of Ferroplasma cupricumulans to Acidiplasma cupricumulans comb. nov.

scientific article published on 23 July 2009

Alcanivorax borkumensis produces an extracellular siderophore in iron-limitation condition maintaining the hydrocarbon-degradation efficiency.

scientific article

Analysis of storage lipid accumulation in Alcanivorax borkumensis: Evidence for alternative triacylglycerol biosynthesis routes in bacteria

scientific article published on 22 November 2006

Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori

scientific article (publication date: 2013)

Biochemical and structural features of a novel cyclodextrinase from cow rumen metagenome.

scientific article published on February 2007

Biochemical diversity of carboxyl esterases and lipases from Lake Arreo (Spain): a metagenomic approach

scientific article (publication date: June 2013)

Biochemical studies on a versatile esterase that is most catalytically active with polyaromatic esters.

scientific article published on 13 January 2014

Biocidal Capability Optimization in Organic−Inorganic Nanocomposites Based on Titania

scientific article published in March 2009

Biodegradable polycaprolactone-titania nanocomposites: preparation, characterization and antimicrobial properties.

scientific article published on 29 April 2013

Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities

scientific article

Bioprospecting reveals class III ω-transaminases converting bulky ketones and environmentally relevant polyamines

scientific article published on 09 January 2019

Bioremediation of Southern Mediterranean oil polluted sites comes of age.

scientific article

Catalytic role of conserved HQGE motif in the CE6 carbohydrate esterase family

scientific article published on 04 September 2007

Chaperonins govern growth of Escherichia coli at low temperatures.

scientific article

Clostridium difficile heterogeneously impacts intestinal community architecture but drives stable metabolome responses

scientific article

Complementary methodologies to investigate human gut microbiota in host health, working towards integrative systems biology

scientific article

Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data

scientific article

Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads.

scientific article published on 29 April 2015

Conversion of a carboxylesterase into a triacylglycerol lipase by a random mutation

scientific article published on 01 November 2005

Determinants and Prediction of Esterase Substrate Promiscuity Patterns.

scientific article published on 28 November 2017

Dissimilatory sulfate reduction in the archaeon 'Candidatus Vulcanisaeta moutnovskia' sheds light on the evolution of sulfur metabolism

scientific article published on 17 August 2020

Effect of carbohydrate fatty acid esters on Streptococcus sobrinus and glucosyltransferase activity

scientific article published in April 2004

Effects of β-lactam antibiotics and fluoroquinolones on human gut microbiota in relation to Clostridium difficile associated diarrhea

scientific article

Elemental sulfur and acetate can support life of a novel strictly anaerobic haloarchaeon

scientific article published on 15 May 2015

Enzymatic acylation of di- and trisaccharides with fatty acids: choosing the appropriate enzyme, support and solvent

scientific article

Enzyme adaptation to habitat thermal legacy shapes the thermal plasticity of marine microbiomes

Expression of a temperature-sensitive esterase in a novel chaperone-based Escherichia coli strain

scientific article

Flavin containing monooxygenases for conversion of trimethylamine in salmon protein hydrolysates

scientific article published on 25 September 2020

Functional consequences of microbial shifts in the human gastrointestinal tract linked to antibiotic treatment and obesity

scientific article

Functional consequences of single:double ring transitions in chaperonins: life in the cold

scientific article published in July 2004

Functional metagenomics unveils a multifunctional glycosyl hydrolase from the family 43 catalysing the breakdown of plant polymers in the calf rumen.

scientific article

Functional microbiome deficits associated with ageing: Chronological age threshold

scientific article published on 15 November 2019

Functional-Based Screening Methods for Lipases, Esterases, and Phospholipases in Metagenomic Libraries ⬇️

scientific article published on January 1, 2012

Gene sets for utilization of primary and secondary nutrition supplies in the distal gut of endangered Iberian lynx

scientific article published in 2012

Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica

scientific article

Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems.

scientific article published on December 2003

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

scientific article

Global regulation of food supply by Pseudomonas putida DOT-T1E

scientific article

Gut microbiota disturbance during antibiotic therapy: a multi-omic approach

Halorhabdus tiamatea: proteogenomics and glycosidase activity measurements identify the first cultivated euryarchaeon from a deep-sea anoxic brine lake as potential polysaccharide degrader

scientific article

Heterotrophic bicarbonate assimilation is the main process of de novo organic carbon synthesis in hadal zone of the Hellenic Trench, the deepest part of Mediterranean Sea.

scientific article published in December 2014

High-Performance Dual-Action Polymer−TiO2Nanocomposite Films via Melting Processing

scientific article published in August 2007

Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata by using functional metagenomics

scientific article

Identification of organic solvent tolerant carboxylic ester hydrolases for organic synthesis

scientific article published on 28 February 2020

Insights into the degradation capacities of Amycolatopsis tucumanensis DSM 45259 guided by microarray data.

scientific article

Interplay of metagenomics and in vitro compartmentalization.

scientific article

Inter‐conversion of catalytic abilities in a bifunctional carboxyl/feruloyl‐esterase from earthworm gut metagenome ⬇️

scientific article published on July 17, 2009

Light-driven novel properties of TiO2-modified polypropylene-based nanocomposite films

Lipase-catalyzed regioselective acylation of sucrose in two-solvent mixtures.

scientific article

Low temperature-induced systems failure in Escherichia coli: insights from rescue by cold-adapted chaperones

scientific article published in January 2006

Metagenomic era for biocatalyst identification ⬇️

scientific article published on 09 October 2010

Metagenomics approaches in systems microbiology

scientific article

Metagenomics for mining new genetic resources of microbial communities

scientific article

Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation.

scientific article

Microbial community of the deep-sea brine Lake Kryos seawater-brine interface is active below the chaotropicity limit of life as revealed by recovery of mRNA.

scientific article published on 26 January 2015

Microbial enzymes mined from the Urania deep-sea hypersaline anoxic basin

scientific article published in August 2005

Microbial life in the Lake Medee, the largest deep-sea salt-saturated formation.

scientific article

Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage

scientific article

Microbial β-glucosidases from cow rumen metagenome enhance the saccharification of lignocellulose in combination with commercial cellulase cocktail ⬇️

scientific article published on September 21, 2012

Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure

article by Manuel Ferrer et al published January 2013 in Environmental Microbiology

Mining enzymes from extreme environments.

scientific article published on 4 June 2007

Mining genomes and 'metagenomes' for novel catalysts

scientific article published on 19 September 2005

Mutation in a "tesB-like" hydroxyacyl-coenzyme A-specific thioesterase gene causes hyperproduction of extracellular polyhydroxyalkanoates by Alcanivorax borkumensis SK2

scientific article

Nanohaloarchaea as beneficiaries of xylan degradation by haloarchaea

scientific article published in 2023

Nitrilotriacetic Amine-Functionalized Polymeric Core-Shell Nanoparticles as Enzyme Immobilization Supports.

scientific article published on 21 July 2017

Novel hybrid esterase-haloacid dehalogenase enzyme

scientific article published on 01 September 2010

Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora.

scientific article published in December 2005

Novel polyphenol oxidase mined from a metagenome expression library of bovine rumen: biochemical properties, structural analysis, and phylogenetic relationships.

scientific article

Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats

scientific article

Proteome reference map of Pseudomonas putida strain KT2440 for genome expression profiling: distinct responses of KT2440 and Pseudomonas aeruginosa strain PAO1 to iron deprivation and a new form of superoxide dismutase.

scientific article

Proteomic Analysis of Methanonatronarchaeum thermophilum AMET1, a Representative of a Putative New Class of Euryarchaeota, "Methanonatronarchaeia".

scientific article published on 23 January 2018

Purification and kinetic characterization of a fructosyltransferase from Aspergillus aculeatus

scientific article published on 23 October 2006

Rational Engineering of Multiple Active Sites in an Ester Hydrolase.

scientific article

Reactome array: forging a link between metabolome and genome

scientific article published on October 2009

Recent trends in industrial microbiology

scientific article

Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the α/β hydrolase family

scientific article

Systems approaches to microbial communities and their functioning.

scientific article published on 14 July 2010

Taxonomic and functional metagenomic profiling of the microbial community in the anoxic sediment of a sub-saline shallow lake (Laguna de Carrizo, Central Spain).

scientific article

The 'pH optimum anomaly' of intracellular enzymes of Ferroplasma acidiphilum.

scientific article

The COMBREX project: design, methodology, and initial results

scientific article

The cellular machinery of Ferroplasma acidiphilum is iron-protein-dominated.

scientific article

The microbial reactome.

scientific article

Tuning the Properties of Natural Promiscuous Enzymes by Engineering Their Nano-environment

scientific article published on 11 December 2020

ULIXES, unravelling and exploiting Mediterranean Sea microbial diversity and ecology for xenobiotics’ and pollutants’ clean up

Understanding the antimicrobial mechanism of TiO₂-based nanocomposite films in a pathogenic bacterium

scientific article published on 19 February 2014

Unveiling microbial life in new deep-sea hypersaline Lake Thetis. Part I: Prokaryotes and environmental settings.

scientific article

Unveiling microbial life in the new deep-sea hypersaline Lake Thetis. Part II: a metagenomic study.

scientific article published on 31 October 2011

List of works by Manuel Ferrer

A purple acidophilic di-ferric DNA ligase from Ferroplasma

Acidiplasma aeolicum gen. nov., sp. nov., a euryarchaeon of the family Ferroplasmaceae isolated from a hydrothermal pool, and transfer of Ferroplasma cupricumulans to Acidiplasma cupricumulans comb. nov.

Alcanivorax borkumensis produces an extracellular siderophore in iron-limitation condition maintaining the hydrocarbon-degradation efficiency.

Analysis of storage lipid accumulation in Alcanivorax borkumensis: Evidence for alternative triacylglycerol biosynthesis routes in bacteria

Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori

Biochemical and structural features of a novel cyclodextrinase from cow rumen metagenome.

Biochemical diversity of carboxyl esterases and lipases from Lake Arreo (Spain): a metagenomic approach

Biochemical studies on a versatile esterase that is most catalytically active with polyaromatic esters.

Biocidal Capability Optimization in Organic−Inorganic Nanocomposites Based on Titania

Biodegradable polycaprolactone-titania nanocomposites: preparation, characterization and antimicrobial properties.

Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities

Bioprospecting reveals class III ω-transaminases converting bulky ketones and environmentally relevant polyamines

Bioremediation of Southern Mediterranean oil polluted sites comes of age.

Catalytic role of conserved HQGE motif in the CE6 carbohydrate esterase family

Chaperonins govern growth of Escherichia coli at low temperatures.

Clostridium difficile heterogeneously impacts intestinal community architecture but drives stable metabolome responses

Complementary methodologies to investigate human gut microbiota in host health, working towards integrative systems biology

Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data

Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads.

Conversion of a carboxylesterase into a triacylglycerol lipase by a random mutation

Determinants and Prediction of Esterase Substrate Promiscuity Patterns.

Dissimilatory sulfate reduction in the archaeon 'Candidatus Vulcanisaeta moutnovskia' sheds light on the evolution of sulfur metabolism

Effect of carbohydrate fatty acid esters on Streptococcus sobrinus and glucosyltransferase activity

Effects of β-lactam antibiotics and fluoroquinolones on human gut microbiota in relation to Clostridium difficile associated diarrhea

Elemental sulfur and acetate can support life of a novel strictly anaerobic haloarchaeon

Enzymatic acylation of di- and trisaccharides with fatty acids: choosing the appropriate enzyme, support and solvent

Enzyme adaptation to habitat thermal legacy shapes the thermal plasticity of marine microbiomes

Expression of a temperature-sensitive esterase in a novel chaperone-based Escherichia coli strain

Flavin containing monooxygenases for conversion of trimethylamine in salmon protein hydrolysates

Functional consequences of microbial shifts in the human gastrointestinal tract linked to antibiotic treatment and obesity

Functional consequences of single:double ring transitions in chaperonins: life in the cold

Functional metagenomics unveils a multifunctional glycosyl hydrolase from the family 43 catalysing the breakdown of plant polymers in the calf rumen.

Functional microbiome deficits associated with ageing: Chronological age threshold

Functional-Based Screening Methods for Lipases, Esterases, and Phospholipases in Metagenomic Libraries ⬇️

Gene sets for utilization of primary and secondary nutrition supplies in the distal gut of endangered Iberian lynx

Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica

Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems.

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

Global regulation of food supply by Pseudomonas putida DOT-T1E

Gut microbiota disturbance during antibiotic therapy: a multi-omic approach

Halorhabdus tiamatea: proteogenomics and glycosidase activity measurements identify the first cultivated euryarchaeon from a deep-sea anoxic brine lake as potential polysaccharide degrader

Heterotrophic bicarbonate assimilation is the main process of de novo organic carbon synthesis in hadal zone of the Hellenic Trench, the deepest part of Mediterranean Sea.

High-Performance Dual-Action Polymer−TiO2Nanocomposite Films via Melting Processing

Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata by using functional metagenomics

Identification of organic solvent tolerant carboxylic ester hydrolases for organic synthesis

Insights into the degradation capacities of Amycolatopsis tucumanensis DSM 45259 guided by microarray data.

Interplay of metagenomics and in vitro compartmentalization.

Inter‐conversion of catalytic abilities in a bifunctional carboxyl/feruloyl‐esterase from earthworm gut metagenome ⬇️

Light-driven novel properties of TiO2-modified polypropylene-based nanocomposite films

Lipase-catalyzed regioselective acylation of sucrose in two-solvent mixtures.

Low temperature-induced systems failure in Escherichia coli: insights from rescue by cold-adapted chaperones

Metagenomic era for biocatalyst identification ⬇️

Metagenomics approaches in systems microbiology

Metagenomics for mining new genetic resources of microbial communities

Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation.

Microbial community of the deep-sea brine Lake Kryos seawater-brine interface is active below the chaotropicity limit of life as revealed by recovery of mRNA.

Microbial enzymes mined from the Urania deep-sea hypersaline anoxic basin

Microbial life in the Lake Medee, the largest deep-sea salt-saturated formation.

Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage

Microbial β-glucosidases from cow rumen metagenome enhance the saccharification of lignocellulose in combination with commercial cellulase cocktail ⬇️

Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure

Mining enzymes from extreme environments.

Mining genomes and 'metagenomes' for novel catalysts

Mutation in a "tesB-like" hydroxyacyl-coenzyme A-specific thioesterase gene causes hyperproduction of extracellular polyhydroxyalkanoates by Alcanivorax borkumensis SK2

Nanohaloarchaea as beneficiaries of xylan degradation by haloarchaea

Nitrilotriacetic Amine-Functionalized Polymeric Core-Shell Nanoparticles as Enzyme Immobilization Supports.

Novel hybrid esterase-haloacid dehalogenase enzyme

Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora.

Novel polyphenol oxidase mined from a metagenome expression library of bovine rumen: biochemical properties, structural analysis, and phylogenetic relationships.

Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats

Proteome reference map of Pseudomonas putida strain KT2440 for genome expression profiling: distinct responses of KT2440 and Pseudomonas aeruginosa strain PAO1 to iron deprivation and a new form of superoxide dismutase.

Proteomic Analysis of Methanonatronarchaeum thermophilum AMET1, a Representative of a Putative New Class of Euryarchaeota, "Methanonatronarchaeia".

Purification and kinetic characterization of a fructosyltransferase from Aspergillus aculeatus

Rational Engineering of Multiple Active Sites in an Ester Hydrolase.

Reactome array: forging a link between metabolome and genome

Recent trends in industrial microbiology

Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the α/β hydrolase family

Systems approaches to microbial communities and their functioning.

Taxonomic and functional metagenomic profiling of the microbial community in the anoxic sediment of a sub-saline shallow lake (Laguna de Carrizo, Central Spain).