List of works - Michail M. Yakimov

'ARMAN' archaea depend on association with euryarchaeal host in culture and in situ.

scientific article

A putative lichenysin A synthetase operon in Bacillus licheniformis: initial characterization.

scientific article

Acidiplasma aeolicum gen. nov., sp. nov., a euryarchaeon of the family Ferroplasmaceae isolated from a hydrothermal pool, and transfer of Ferroplasma cupricumulans to Acidiplasma cupricumulans comb. nov.

scientific article published on 23 July 2009

Alcanivorax borkumensis gen. nov., sp. nov., a new, hydrocarbon-degrading and surfactant-producing marine bacterium. ⬇️

scientific article

Alcanivorax borkumensis produces an extracellular siderophore in iron-limitation condition maintaining the hydrocarbon-degradation efficiency.

scientific article

Application of relative real-time PCR to detect differential expression of virulence genes in Vibrio anguillarum under standard and stressed growth conditions.

scientific article

Assessing terminal restriction fragment length polymorphism suitability for the description of bacterial community structure and dynamics in hydrocarbon-polluted marine environments

scientific article published on 01 January 2005

Author Correction: The discovery of Lake Hephaestus, the youngest athalassohaline deep-sea formation on Earth.

scientific article published on 24 May 2019

Bacterial population and biodegradation potential in chronically crude oil-contaminated marine sediments are strongly linked to temperature

scientific article published on 29 June 2015

Biodegradation of crude oil by individual bacterial strains and a mixed bacterial consortium.

scientific article published on June 2015

Biogenic nanopalladium based remediation of chlorinated hydrocarbons in marine environments

scientific article published on 18 December 2013

Bioprospecting reveals class III ω-transaminases converting bulky ketones and environmentally relevant polyamines

scientific article published on 09 January 2019

Bioremediation of Southern Mediterranean oil polluted sites comes of age.

scientific article

Carbohydrate‐dependent sulfur respiration in halo(alkali)philic archaea

scientific article published in 2021

Chaperonins govern growth of Escherichia coli at low temperatures.

scientific article

ComA-dependent transcriptional activation of lichenysin A synthetase promoter in Bacillus subtilis cells.

scientific article published on November 1997

Comparative analysis of deep-sea bacterioplankton OMICS revealed the occurrence of habitat-specific genomic attributes

scientific article

Composition and dynamics of biostimulated indigenous oil-degrading microbial consortia from the Irish, North and Mediterranean Seas: a mesocosm study

scientific article published on 23 April 2012

Crude oil-induced structural shift of coastal bacterial communities of rod bay (Terra Nova Bay, Ross Sea, Antarctica) and characterization of cultured cold-adapted hydrocarbonoclastic bacteria

scientific article

Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase

scientific article

Effect of bioemulsificant exopolysaccharide (EPS₂₀₀₃) on microbial community dynamics during assays of oil spill bioremediation: a microcosm study

scientific article published on 12 October 2012

Effect of the earthworms Lumbricus terrestris and Aporrectodea caliginosa on bacterial diversity in soil

scientific article

Effective bioremediation strategy for rapid in situ cleanup of anoxic marine sediments in mesocosm oil spill simulation.

scientific article

Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria

scientific article published on 01 June 2007

Evidence for isolated evolution of deep-sea ciliate communities through geological separation and environmental selection

scientific article (publication date: 8 July 2013)

Functional consequences of single:double ring transitions in chaperonins: life in the cold

scientific article published in July 2004

Gene sets for utilization of primary and secondary nutrition supplies in the distal gut of endangered Iberian lynx

scientific article published in 2012

Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica

scientific article

Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems.

scientific article published on December 2003

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

scientific article

Halorhabdus tiamatea: proteogenomics and glycosidase activity measurements identify the first cultivated euryarchaeon from a deep-sea anoxic brine lake as potential polysaccharide degrader

scientific article

Heterotrophic bicarbonate assimilation is the main process of de novo organic carbon synthesis in hadal zone of the Hellenic Trench, the deepest part of Mediterranean Sea.

scientific article published in December 2014

Hydrostatic pressure affects membrane and storage lipid compositions of the piezotolerant hydrocarbon-degrading Marinobacter hydrocarbonoclasticus strain #5.

scientific article

Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata by using functional metagenomics

scientific article

Identification of Culturable Oligotrophic Bacteria within Naturally Occurring Bacterioplankton Communities of the Ligurian Sea by 16S rRNA Sequencing and Probing.

scientific article

Intrinsic bioremediation potential of a chronically polluted marine coastal area.

scientific article published on 3 August 2015

Limits of life in MgCl2-containing environments: chaotropicity defines the window.

scientific article published in March 2007

Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum YT.

scientific article

Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep

scientific article

Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation

scientific article published on 23 July 2015

Microbial community dynamics during assays of harbour oil spill bioremediation: a microscale simulation study.

scientific article

Microbial community of a hydrothermal mud vent underneath the deep-sea anoxic brine lake Urania (eastern Mediterranean).

scientific article

Microbial community of the deep-sea brine Lake Kryos seawater-brine interface is active below the chaotropicity limit of life as revealed by recovery of mRNA.

scientific article published on 26 January 2015

Microbial enzymes mined from the Urania deep-sea hypersaline anoxic basin

scientific article

Microbial eukaryotes in the hypersaline anoxic L'Atalante deep-sea basin

scientific article

Microbial life in the Lake Medee, the largest deep-sea salt-saturated formation.

scientific article

Modulation of CYP1A and genotoxic effects in European seabass (Dicentrarchus labrax) exposed to weathered oil: a mesocosm study

scientific article published on 08 September 2011

Multiplication of microbes below 0.690 water activity: implications for terrestrial and extraterrestrial life ⬇️

scientific article

Nanohaloarchaea as beneficiaries of xylan degradation by haloarchaea

scientific article published in 2023

Natrinema salaciae sp. nov., a halophilic archaeon isolated from the deep, hypersaline anoxic Lake Medee in the Eastern Mediterranean Sea.

scientific article

Natural microbial diversity in superficial sediments of Milazzo Harbor (Sicily) and community successions during microcosm enrichment with various hydrocarbons.

scientific article published in September 2005

Novel hybrid esterase-haloacid dehalogenase enzyme

scientific article published on 01 September 2010

Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora.

scientific article

Novel polyphenol oxidase mined from a metagenome expression library of bovine rumen: biochemical properties, structural analysis, and phylogenetic relationships.

scientific article

Obligate oil-degrading marine bacteria

scientific article

Oleispira antarctica gen. nov., sp. nov., a novel hydrocarbonoclastic marine bacterium isolated from Antarctic coastal sea water

scientific article

Palleronia abyssalis sp. nov., isolated from the deep Mediterranean Sea and the emended description of the genus Palleronia and of the species Palleronia marisminoris

scientific article published on 19 December 2014

Partaking of Archaea to biogeochemical cycling in oxygen-deficient zones of meromictic saline Lake Faro (Messina, Italy).

scientific article

Populations of heavy fuel oil-degrading marine microbial community in presence of oil sorbent materials

scientific article published in August 2009

Predominant growth of Alcanivorax during experiments on "oil spill bioremediation" in mesocosms.

scientific article

Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats

scientific article

Primary producing prokaryotic communities of brine, interface and seawater above the halocline of deep anoxic lake L'Atalante, Eastern Mediterranean Sea.

scientific article

Protistan community patterns within the brine and halocline of deep hypersaline anoxic basins in the eastern Mediterranean Sea.

scientific article published on 5 December 2008

Reactome array: forging a link between metabolome and genome

scientific article published on October 2009

Shewanella sp. GA-22, a psychrophilic hydrocarbonoclastic antarctic bacterium producing polyunsaturated fatty acids.

scientific article published in January 2003

Shifts in the meso- and bathypelagic archaea communities composition during recovery and short-term handling of decompressed deep-sea samples.

scientific article published on 8 April 2015

Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the α/β hydrolase family

scientific article

Stratified prokaryote network in the oxic-anoxic transition of a deep-sea halocline.

scientific article

Structural characterization of lichenysin A components by fast atom bombardment tandem mass spectrometry

scientific article published on 01 May 1999

Structure and activity of the cold-active and anion-activated carboxyl esterase OLEI01171 from the oil-degrading marine bacterium Oleispira antarctica

scientific article

Study of bacterial communities in Antarctic coastal waters by a combination of 16S rRNA and 16S rDNA sequencing

scientific article

Sulfur cycling and methanogenesis primarily drive microbial colonization of the highly sulfidic Urania deep hypersaline basin

scientific article

Symbiosis between nanohaloarchaeon and haloarchaeon is based on utilization of different polysaccharides

scientific article published on 05 August 2020

Thalassolituus oleivorans gen. nov., sp. nov., a novel marine bacterium that obligately utilizes hydrocarbons.

scientific article

The Structure of the Lipid A of Gram-Negative Cold-Adapted Bacteria Isolated from Antarctic Environments

scientific article published on 26 November 2020

The discovery of Lake Hephaestus, the youngest athalassohaline deep-sea formation on Earth

scientific article published in Scientific Reports

The environment shapes microbial enzymes: five cold-active and salt-resistant carboxylesterases from marine metagenomes.

scientific article

Thermoleophilum album and Thermoleophilum minutum are culturable representatives of group 2 of the Rubrobacteridae (Actinobacteria) ⬇️

scientific article published on March 1, 2003

Unveiling microbial activities along the halocline of Thetis, a deep-sea hypersaline anoxic basin.

scientific article

Unveiling microbial life in new deep-sea hypersaline Lake Thetis. Part I: Prokaryotes and environmental settings.

scientific article

Unveiling microbial life in the new deep-sea hypersaline Lake Thetis. Part II: a metagenomic study.

scientific article published on 31 October 2011

Upstream-independent ribosomal RNA amplification analysis (URA): a new approach to characterizing the diversity of natural microbial communities.

scientific article published on October 2001

List of works by Michail M. Yakimov

'ARMAN' archaea depend on association with euryarchaeal host in culture and in situ.

A putative lichenysin A synthetase operon in Bacillus licheniformis: initial characterization.

Acidiplasma aeolicum gen. nov., sp. nov., a euryarchaeon of the family Ferroplasmaceae isolated from a hydrothermal pool, and transfer of Ferroplasma cupricumulans to Acidiplasma cupricumulans comb. nov.

Alcanivorax borkumensis gen. nov., sp. nov., a new, hydrocarbon-degrading and surfactant-producing marine bacterium. ⬇️

Alcanivorax borkumensis produces an extracellular siderophore in iron-limitation condition maintaining the hydrocarbon-degradation efficiency.

Application of relative real-time PCR to detect differential expression of virulence genes in Vibrio anguillarum under standard and stressed growth conditions.

Assessing terminal restriction fragment length polymorphism suitability for the description of bacterial community structure and dynamics in hydrocarbon-polluted marine environments

Author Correction: The discovery of Lake Hephaestus, the youngest athalassohaline deep-sea formation on Earth.

Bacterial population and biodegradation potential in chronically crude oil-contaminated marine sediments are strongly linked to temperature

Biodegradation of crude oil by individual bacterial strains and a mixed bacterial consortium.

Biogenic nanopalladium based remediation of chlorinated hydrocarbons in marine environments

Bioprospecting reveals class III ω-transaminases converting bulky ketones and environmentally relevant polyamines

Bioremediation of Southern Mediterranean oil polluted sites comes of age.

Carbohydrate‐dependent sulfur respiration in halo(alkali)philic archaea

Chaperonins govern growth of Escherichia coli at low temperatures.

ComA-dependent transcriptional activation of lichenysin A synthetase promoter in Bacillus subtilis cells.

Comparative analysis of deep-sea bacterioplankton OMICS revealed the occurrence of habitat-specific genomic attributes

Composition and dynamics of biostimulated indigenous oil-degrading microbial consortia from the Irish, North and Mediterranean Seas: a mesocosm study

Crude oil-induced structural shift of coastal bacterial communities of rod bay (Terra Nova Bay, Ross Sea, Antarctica) and characterization of cultured cold-adapted hydrocarbonoclastic bacteria

Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase

Effect of bioemulsificant exopolysaccharide (EPS₂₀₀₃) on microbial community dynamics during assays of oil spill bioremediation: a microcosm study

Effect of the earthworms Lumbricus terrestris and Aporrectodea caliginosa on bacterial diversity in soil

Effective bioremediation strategy for rapid in situ cleanup of anoxic marine sediments in mesocosm oil spill simulation.

Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria

Evidence for isolated evolution of deep-sea ciliate communities through geological separation and environmental selection

Functional consequences of single:double ring transitions in chaperonins: life in the cold

Gene sets for utilization of primary and secondary nutrition supplies in the distal gut of endangered Iberian lynx

Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica

Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems.

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

Halorhabdus tiamatea: proteogenomics and glycosidase activity measurements identify the first cultivated euryarchaeon from a deep-sea anoxic brine lake as potential polysaccharide degrader

Heterotrophic bicarbonate assimilation is the main process of de novo organic carbon synthesis in hadal zone of the Hellenic Trench, the deepest part of Mediterranean Sea.

Hydrostatic pressure affects membrane and storage lipid compositions of the piezotolerant hydrocarbon-degrading Marinobacter hydrocarbonoclasticus strain #5.

Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata by using functional metagenomics

Identification of Culturable Oligotrophic Bacteria within Naturally Occurring Bacterioplankton Communities of the Ligurian Sea by 16S rRNA Sequencing and Probing.

Intrinsic bioremediation potential of a chronically polluted marine coastal area.

Limits of life in MgCl2-containing environments: chaotropicity defines the window.

Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum YT.

Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep

Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation

Microbial community dynamics during assays of harbour oil spill bioremediation: a microscale simulation study.

Microbial community of a hydrothermal mud vent underneath the deep-sea anoxic brine lake Urania (eastern Mediterranean).

Microbial community of the deep-sea brine Lake Kryos seawater-brine interface is active below the chaotropicity limit of life as revealed by recovery of mRNA.

Microbial enzymes mined from the Urania deep-sea hypersaline anoxic basin

Microbial eukaryotes in the hypersaline anoxic L'Atalante deep-sea basin

Microbial life in the Lake Medee, the largest deep-sea salt-saturated formation.

Modulation of CYP1A and genotoxic effects in European seabass (Dicentrarchus labrax) exposed to weathered oil: a mesocosm study

Multiplication of microbes below 0.690 water activity: implications for terrestrial and extraterrestrial life ⬇️

Nanohaloarchaea as beneficiaries of xylan degradation by haloarchaea

Natrinema salaciae sp. nov., a halophilic archaeon isolated from the deep, hypersaline anoxic Lake Medee in the Eastern Mediterranean Sea.

Natural microbial diversity in superficial sediments of Milazzo Harbor (Sicily) and community successions during microcosm enrichment with various hydrocarbons.

Novel hybrid esterase-haloacid dehalogenase enzyme

Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora.

Novel polyphenol oxidase mined from a metagenome expression library of bovine rumen: biochemical properties, structural analysis, and phylogenetic relationships.

Obligate oil-degrading marine bacteria

Oleispira antarctica gen. nov., sp. nov., a novel hydrocarbonoclastic marine bacterium isolated from Antarctic coastal sea water

Palleronia abyssalis sp. nov., isolated from the deep Mediterranean Sea and the emended description of the genus Palleronia and of the species Palleronia marisminoris

Partaking of Archaea to biogeochemical cycling in oxygen-deficient zones of meromictic saline Lake Faro (Messina, Italy).

Populations of heavy fuel oil-degrading marine microbial community in presence of oil sorbent materials

Predominant growth of Alcanivorax during experiments on "oil spill bioremediation" in mesocosms.

Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats

Primary producing prokaryotic communities of brine, interface and seawater above the halocline of deep anoxic lake L'Atalante, Eastern Mediterranean Sea.

Protistan community patterns within the brine and halocline of deep hypersaline anoxic basins in the eastern Mediterranean Sea.

Reactome array: forging a link between metabolome and genome

Shewanella sp. GA-22, a psychrophilic hydrocarbonoclastic antarctic bacterium producing polyunsaturated fatty acids.

Shifts in the meso- and bathypelagic archaea communities composition during recovery and short-term handling of decompressed deep-sea samples.

Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the α/β hydrolase family

Stratified prokaryote network in the oxic-anoxic transition of a deep-sea halocline.

Structural characterization of lichenysin A components by fast atom bombardment tandem mass spectrometry

Structure and activity of the cold-active and anion-activated carboxyl esterase OLEI01171 from the oil-degrading marine bacterium Oleispira antarctica

Study of bacterial communities in Antarctic coastal waters by a combination of 16S rRNA and 16S rDNA sequencing

Sulfur cycling and methanogenesis primarily drive microbial colonization of the highly sulfidic Urania deep hypersaline basin

Symbiosis between nanohaloarchaeon and haloarchaeon is based on utilization of different polysaccharides

Thalassolituus oleivorans gen. nov., sp. nov., a novel marine bacterium that obligately utilizes hydrocarbons.

The Structure of the Lipid A of Gram-Negative Cold-Adapted Bacteria Isolated from Antarctic Environments

The discovery of Lake Hephaestus, the youngest athalassohaline deep-sea formation on Earth

The environment shapes microbial enzymes: five cold-active and salt-resistant carboxylesterases from marine metagenomes.

Thermoleophilum album and Thermoleophilum minutum are culturable representatives of group 2 of the Rubrobacteridae (Actinobacteria) ⬇️

Unveiling microbial activities along the halocline of Thetis, a deep-sea hypersaline anoxic basin.