List of works - Tom Ruttink

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits

scientific article published on 11 June 2018

A molecular timetable for apical bud formation and dormancy induction in poplar.

scientific article

An integrated strategy combining DNA walking and NGS to detect GMOs

scientific article

Are We There Yet? Reliably Estimating the Completeness of Plant Genome Sequences

scientific article published on 10 August 2016

Assessment of primer/template mismatch effects on real-time PCR amplification of target taxa for GMO quantification.

scientific article published in October 2009

BREEDIT: a multiplex genome editing strategy to improve complex quantitative traits in maize

scientific article published in 2022

Bacterial Community Profiling of Plastic Litter in the Belgian Part of the North Sea.

scientific article

Bud set in poplar--genetic dissection of a complex trait in natural and hybrid populations.

scientific article published on 6 October 2010

Characterization of position-induced spatial and temporal regulation of transgene promoter activity in plants

scientific article published on 01 May 2001

Clade classification of monolignol biosynthesis gene family members reveals target genes to decrease lignin in Lolium perenne

scientific article published on 13 March 2015

Combining multiplex gene editing and doubled haploid technology in maize

scientific article published in 2023

De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification

scientific article

ENOD40 affects elongation growth in tobacco Bright Yellow-2 cells by alteration of ethylene biosynthesis kinetics.

scientific article

Exploring the methanogen and bacterial communities of rumen environments: solid adherent, fluid and epimural.

scientific article published on 22 December 2016

Gene expression during the induction, maintenance, and release of dormancy in apical buds of poplar.

scientific article

Genetic composition and diversity of Arabica coffee in the crop’s centre of origin and its impact on four major fungal diseases

scientific article published in 2022

Impact of Cross-Contamination Concentrations of Doxycycline Hyclate on the Microbial Ecosystem in an Ex Vivo Model of the Pig's Cecum

scientific article published on 19 September 2018

In the name of the rose: a roadmap for rose research in the genome era

scientific article published on 03 May 2019

Knowledge-technology-based discovery of unauthorized genetically modified organisms

scientific article

Molecular toolbox for the identification of unknown genetically modified organisms.

scientific article

Overcoming challenges in variant calling: exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne)

scientific article published on 01 February 2019

Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome

scientific article published on 09 July 2019

Phenotypic variation and quantitative trait loci for resistance to southern anthracnose and clover rot in red clover

scientific article published in 2022

Phylogenomic analysis clarifies the evolutionary origin of Coffea arabica ⬇️

scientific article published on 29 December 2020

Quantitative NMR microscopy of osmotic stress responses in maize and pearl millet.

scientific article

Single Nucleotide Polymorphisms and Biochemical Markers As Complementary Tools To Characterize Hops ( Humulus lupulus L.) in Brewing Practice

scientific article published on 21 March 2019

Statistical framework for detection of genetically modified organisms based on Next Generation Sequencing

scientific article published on 21 July 2015

Temporal Dynamics of Bacterial and Fungal Colonization on Plastic Debris in the North Sea.

scientific article

Temporal changes in genetic diversity and forage yield of perennial ryegrass in monoculture and in combination with red clover in swards

scientific article published in PLoS ONE

To grow or survive: Which are the strategies of a perennial grass to face severe seasonal stress?

scientific article published on 06 February 2021

Utilization of Tissue Ploidy Level Variation in de Novo Transcriptome Assembly of Pinus sylvestris

scientific article published on 07 October 2019

Whole-Genome Deep Sequencing Reveals Host-Driven in-planta Evolution of Columnea Latent Viroid (CLVd) Quasi-Species Populations

scientific article published on 05 May 2020

List of works by Tom Ruttink

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits

A molecular timetable for apical bud formation and dormancy induction in poplar.

An integrated strategy combining DNA walking and NGS to detect GMOs

Are We There Yet? Reliably Estimating the Completeness of Plant Genome Sequences

Assessment of primer/template mismatch effects on real-time PCR amplification of target taxa for GMO quantification.

BREEDIT: a multiplex genome editing strategy to improve complex quantitative traits in maize

Bacterial Community Profiling of Plastic Litter in the Belgian Part of the North Sea.

Bud set in poplar--genetic dissection of a complex trait in natural and hybrid populations.

Characterization of position-induced spatial and temporal regulation of transgene promoter activity in plants

Clade classification of monolignol biosynthesis gene family members reveals target genes to decrease lignin in Lolium perenne

Combining multiplex gene editing and doubled haploid technology in maize

De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification

ENOD40 affects elongation growth in tobacco Bright Yellow-2 cells by alteration of ethylene biosynthesis kinetics.

Exploring the methanogen and bacterial communities of rumen environments: solid adherent, fluid and epimural.

Gene expression during the induction, maintenance, and release of dormancy in apical buds of poplar.

Genetic composition and diversity of Arabica coffee in the crop’s centre of origin and its impact on four major fungal diseases

Impact of Cross-Contamination Concentrations of Doxycycline Hyclate on the Microbial Ecosystem in an Ex Vivo Model of the Pig's Cecum

In the name of the rose: a roadmap for rose research in the genome era

Knowledge-technology-based discovery of unauthorized genetically modified organisms

Molecular toolbox for the identification of unknown genetically modified organisms.

Overcoming challenges in variant calling: exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne)

Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome

Phenotypic variation and quantitative trait loci for resistance to southern anthracnose and clover rot in red clover

Phylogenomic analysis clarifies the evolutionary origin of Coffea arabica ⬇️

Quantitative NMR microscopy of osmotic stress responses in maize and pearl millet.

Single Nucleotide Polymorphisms and Biochemical Markers As Complementary Tools To Characterize Hops ( Humulus lupulus L.) in Brewing Practice

Statistical framework for detection of genetically modified organisms based on Next Generation Sequencing

Temporal Dynamics of Bacterial and Fungal Colonization on Plastic Debris in the North Sea.

Temporal changes in genetic diversity and forage yield of perennial ryegrass in monoculture and in combination with red clover in swards

To grow or survive: Which are the strategies of a perennial grass to face severe seasonal stress?

Utilization of Tissue Ploidy Level Variation in de Novo Transcriptome Assembly of Pinus sylvestris

Whole-Genome Deep Sequencing Reveals Host-Driven in-planta Evolution of Columnea Latent Viroid (CLVd) Quasi-Species Populations