List of works by Damien Chaussabel

-A curated transcriptomic dataset collection relevant to embryonic development associated with in vitro fertilization in healthy individuals and patients with polycystic ovary syndrome

scientific article published on 23 February 2017

118Transcriptional Profiling Discriminates Complete and Incomplete Kawasaki Disease (KD) from Adenovirus infection (HAdV).

scientific article published in December 2014

31st Annual Meeting and Associated Programs of the Society for Immunotherapy of Cancer (SITC 2016): part two: National Harbor, MD, USA. 9-13 November 2016

scientific article published oln 16 November 2016

A 380-gene meta-signature of active tuberculosis compared with healthy controls

scientific article published on 13 April 2016

A Neutrophil-Driven Inflammatory Signature Characterizes the Blood Transcriptome Fingerprint of Psoriasis

scientific article published on 24 November 2020

A collection of annotated and harmonized human breast cancer transcriptome datasets, including immunologic classification.

scientific article published on 20 March 2017

A compendium of monocyte transcriptome datasets to foster biomedical knowledge discovery.

scientific article published on 7 March 2016

A curated collection of transcriptome datasets to investigate the molecular mechanisms of immunoglobulin E-mediated atopic diseases

A curated collection of transcriptome datasets to investigate the molecular mechanisms of immunoglobulin E-mediated atopic diseases

scientific article published on 01 January 2019

A curated compendium of monocyte transcriptome datasets of relevance to human monocyte immunobiology research

scientific article published on 25 April 2016

A curated transcriptome dataset collection to investigate inborn errors of immunity

A curated transcriptome dataset collection to investigate the development and differentiation of the human placenta and its associated pathologies

scientific article published on 09 March 2016

A curated transcriptome dataset collection to investigate the functional programming of human hematopoietic cells in early life

scientific article published on 30 March 2016

A curated transcriptome dataset collection to investigate the immunobiology of HIV infection

scientific article published on 11 March 2016

A genomic approach to human autoimmune diseases

scientific article

A modular analysis framework for blood genomics studies: application to systemic lupus erythematosus

scientific article published on July 2008

A modular framework for the development of targeted Covid-19 blood transcript profiling panels

scientific article published on 31 July 2020

A multicentre, randomised, double-blind, placebo-controlled trial with the interleukin-1 receptor antagonist anakinra in patients with systemic-onset juvenile idiopathic arthritis (ANAJIS trial)

scientific article

A narrow repertoire of transcriptional modules responsive to pyogenic bacteria is impaired in patients carrying loss-of-function mutations in MYD88 or IRAK4

scientific article

A novel form of human STAT1 deficiency impairing early but not late responses to interferons

scientific article

A prospective cohort for the investigation of alteration in temporal transcriptional and microbiome trajectories preceding preterm birth: a study protocol

scientific article published on 15 January 2019

A protocol for extraction of total RNA from finger stick whole blood samples preserved with TempusTM solution

A recessive form of hyper-IgE syndrome by disruption of ZNF341-dependent STAT3 transcription and activity

scientific article published on 01 June 2018

A systematic approach to biomarker discovery; preamble to "the iSBTc-FDA taskforce on immunotherapy biomarkers".

scientific article

A transcriptomic reporter assay employing neutrophils to measure immunogenic activity of septic patients' plasma

scientific article

A vision and a prescription for big data-enabled medicine

scientific article

Adult-onset type 1 diabetes patients display decreased IGRP-specific Tr1 cells in blood

scientific article published on 2 September 2015

Alteration of migration and maturation of dendritic cells and T-cell depletion in the course of experimental Trypanosoma cruzi infection.

scientific article

An interactive web application for the dissemination of human systems immunology data

scientific article

An interferon signature is associated with HAM/TSP but not viral containment in HTLV-1 infection

scientific article published on 6 June 2011

An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis ⬇️

scientific article (publication date: 19 August 2010)

Analysis of Significance Patterns Identifies Ubiquitous and Disease-Specific Gene-Expression Signatures in Patient Peripheral Blood Leukocytes

article

Analysis of Transcriptional Signatures in Response to Listeria monocytogenes Infection Reveals Temporal Changes That Result from Type I Interferon Signaling

scientific article

Annexin A3 in sepsis: novel perspectives from an exploration of public transcriptome data

scientific article published on 18 July 2020

Assessing the human immune system through blood transcriptomics

scientific article

Assessment of immune status using blood transcriptomics and potential implications for global health

scientific article published on February 2015

Association of RNA Biosignatures With Bacterial Infections in Febrile Infants Aged 60 Days or Younger

scientific article published on August 2016

Author Correction: Progression of whole-blood transcriptional signatures from interferon-induced to neutrophil-associated patterns in severe influenza

scientific article published on 01 March 2019

Biomedical literature mining: challenges and solutions in the 'omics' era.

scientific article published on January 2004

Blood Interferon Signatures Putatively Link Lack of Protection Conferred by the RTS,S Recombinant Malaria Vaccine to an Antigen-specific IgE Response

scientific article published on 29 September 2015

Blood Transcriptional Fingerprints to Assess the Immune Status of Human Subjects

scholarly article published 11 October 2010

Blood gene transcript signature profiling in pregnancies resulting in preterm birth: A systematic review

scientific article published on 22 September 2020

Blood genome expression profiles in infants with congenital cytomegalovirus infection

scientific article published on 15 July 2020

Blood leukocyte microarrays to diagnose systemic onset juvenile idiopathic arthritis and follow the response to IL-1 blockade

Blood leukocyte microarrays to diagnose systemic onset juvenile idiopathic arthritis and follow the response to IL-1 blockade

scientific article

Blood-Borne RNA Correlates with Disease Activity and IFN-Stimulated Gene Expression in Systemic Lupus Erythematosus.

scientific article published on 17 August 2016

CD2 distinguishes two subsets of human plasmacytoid dendritic cells with distinct phenotype and functions

scientific article

Characterization of Peripheral Blood Mononuclear Cells Gene Expression Profiles of Pediatric Staphylococcus aureus Persistent and Non-Carriers Using a Targeted Assay

scientific article published on 03 August 2020

Cohort profile: molecular signature in pregnancy (MSP): longitudinal high-frequency sampling to characterise cross-omic trajectories in pregnancy in a resource-constrained setting

scientific article published on 10 October 2020

Copy number loss of the interferon gene cluster in melanomas is linked to reduced T cell infiltrate and poor patient prognosis

scientific article

Correction: Transcriptional Blood Signatures Distinguish Pulmonary Tuberculosis, Pulmonary Sarcoidosis, Pneumonias and Lung Cancers.

scientific article published on 21 August 2013

Current perspectives on systems immunology approaches to rheumatic diseases

scientific article

Data management: it starts at the bench

scientific article (publication date: December 2009)

Definition of erythroid cell-positive blood transcriptome phenotypes associated with severe respiratory syncytial virus infection

scientific article published on 01 December 2020

Democratizing systems immunology with modular transcriptional repertoire analyses

scientific article published on April 2014

Dendritic Cells, Therapeutic Vectors of Immunity and Tolerance

Detectable changes in the blood transcriptome are present after two weeks of antituberculosis therapy

scientific article

Development of a fixed module repertoire for the analysis and interpretation of blood transcriptome data

scientific article published on 19 July 2021

Diarrheagenic Escherichia coli carrying supplementary virulence genes are an important cause of moderate to severe diarrhoeal disease in Mexico

scientific article

Differential regulation of the immune system in a brain-liver-fatsorgan network during short term fasting

scientific article published on 08 June 2020

Dissection of immune gene networks in primary melanoma tumors critical for antitumor surveillance of patients with stage II-III resectable disease

scientific article published on 12 February 2014

Ductal injection of JNK inhibitors before pancreas preservation prevents islet apoptosis and improves islet graft function

scientific article

Emerging concepts in biomarker discovery; the US-Japan Workshop on Immunological Molecular Markers in Oncology

scientific article

Enhanced monocyte response and decreased central memory T cells in children with invasive Staphylococcus aureus infections

scientific article

Erratum to: Mutations of HNRNPA0 and WIF1 predispose members of a large family to multiple cancers

scientific article published in June 2015

Finger stick blood collection for gene expression profiling and storage of tempus blood RNA tubes.

scientific article published on 15 June 2016

Functional specializations of human epidermal Langerhans cells and CD14+ dermal dendritic cells

scientific article published in September 2008

Gene Expression in Peripheral Blood Mononuclear Cells from Children with Diabetes

article

Gene expression changes in human islets exposed to type 1 diabetic serum.

scientific article published on July 2012

Gene expression patterns in blood leukocytes discriminate patients with acute infections

scientific article

Gene expression profiling of human pancreatic islets undergoing a simulated process of instant blood-mediated inflammatory reaction

scientific article published in March 2008

Genome-wide Innate Immune Responsiveness Profiles of Patients with Inborn Errors of Toll-like Receptor Signaling

scholarly article by Laia Alsina et al published January 2010 in Clinical Immunology

Genomic transcriptional profiling identifies a candidate blood biomarker signature for the diagnosis of septicemic melioidosis

scientific article

HIV-tuberculosis-associated immune reconstitution inflammatory syndrome is characterized by Toll-like receptor and inflammasome signalling

scientific article

Haploinsufficiency at the human IFNGR2 locus contributes to mycobacterial disease

scientific article published on 16 November 2012

Herpes simplex encephalitis in children with autosomal recessive and dominant TRIF deficiency

scientific article published on 21 November 2011

Herpes simplex virus encephalitis in a patient with complete TLR3 deficiency: TLR3 is otherwise redundant in protective immunity

scientific article

Heterozygous TBK1 mutations impair TLR3 immunity and underlie herpes simplex encephalitis of childhood

scientific article

Host immune transcriptional profiles reflect the variability in clinical disease manifestations in patients with Staphylococcus aureus infections

scientific article (publication date: 2012)

How the study of children with rheumatic diseases identified interferon-alpha and interleukin-1 as novel therapeutic targets

scientific article published on June 2008

Human Adaptive Immunity Rescues an Inborn Error of Innate Immunity.

scientific article published on February 2017

Human TYK2 deficiency: Mycobacterial and viral infections without hyper-IgE syndrome

scientific article

IL-10 up-regulates nitric oxide (NO) synthesis by lipopolysaccharide (LPS)-activated macrophages: improved control of Trypanosoma cruzi infection

scientific article published on July 1998

IRF4 haploinsufficiency in a family with Whipple's disease.

scientific article

IRF8 mutations and human dendritic-cell immunodeficiency

scientific article

Identification of the key differential transcriptional responses of human whole blood following TLR2 or TLR4 ligation in-vitro

scientific article

Immunodeficiency, autoinflammation and amylopectinosis in humans with inherited HOIL-1 and LUBAC deficiency

scientific article

Improving efficacy of clinical islet transplantation with iodixanol-based islet purification, thymoglobulin induction, and blockage of IL-1β and TNF-α

scientific article published on 08 March 2011

Incidence, clinical presentation, and antimicrobial resistance trends in Salmonella and Shigella infections from children in Yucatan, Mexico.

scientific article published on October 2013

Increased abundance of ADAM9 transcripts in the blood is associated with tissue damage

scientific article published on 09 April 2015

Induction of B7-H6, a ligand for the natural killer cell-activating receptor NKp30, in inflammatory conditions

scientific article published on 17 May 2013

Induction of TRAIL- and TNF-alpha-dependent apoptosis in human monocyte-derived dendritic cells by microfilariae of Brugia malayi

scientific article published on November 2008

Infectious disease. Life-threatening influenza and impaired interferon amplification in human IRF7 deficiency

scientific article

Influence of coinfecting pathogens on HIV expression: evidence for a role of Toll-like receptors

scientific article published on June 2004

Influence of storage conditions of small volumes of blood on immune transcriptomic profiles

scientific article published on 13 March 2020

Influence of the transcription factor RORgammat on the development of NKp46+ cell populations in gut and skin

scientific article published on 23 November 2008

Inherited human IRAK-1 deficiency selectively impairs TLR signaling in fibroblasts

scientific article published on 09 January 2017

Interferon signature in the blood in inflammatory common variable immune deficiency

scientific article

Introducing a New Dimension to Molecular Disease Classifications

scholarly article by Noémie Jourde-Chiche published in June 2016

Life-threatening influenza pneumonitis in a child with inherited IRF9 deficiency

scientific article published on 24 August 2018

Long-Chain Acyl-CoA Synthetase 1 Role in Sepsis and Immunity: Perspectives From a Parallel Review of Public Transcriptome Datasets and of the Literature

scientific article published on 18 October 2019

Low HERV-K(C4) copy number is associated with type 1 diabetes

scientific article published on 15 January 2014

Microarray-based identification of novel biomarkers in IL-1-mediated diseases

scientific article

Mining microarray expression data by literature profiling

scientific article

Modular transcriptional repertoire analyses identify a blood neutrophil signature as a candidate biomarker for lupus nephritis.

scientific article published on 27 December 2016

Modular transcriptional repertoire analyses of adults with systemic lupus erythematosus reveal distinct type I and type II interferon signatures

scientific article

Molecular signatures of antibody responses derived from a systems biology study of five human vaccines

scientific article published on 15 December 2013

Multicenter Systems Analysis of Human Blood Reveals Immature Neutrophils in Males and During Pregnancy.

scientific article published on 08 February 2017

Mutations of HNRNPA0 and WIF1 predispose members of a large family to multiple cancers

scientific article

Nasopharyngeal Microbiota, Host Transcriptome, and Disease Severity in Children with Respiratory Syncytial Virus Infection.

scientific article

Neuroinvasive West Nile Infection Elicits Elevated and Atypically Polarized T Cell Responses That Promote a Pathogenic Outcome

scientific article published on 21 January 2016

Paradoxical association between blood modular interferon signatures and quality of life in patients with systemic lupus erythematosus

scientific article published on 27 November 2019

Plasticity and virus specificity of the airway epithelial cell immune response during respiratory virus infection

scientific article

Production of interleukin-27 by human neutrophils regulates their function during bacterial infection

scientific article published on 25 October 2012

Programmed death ligand 1 is over-expressed by neutrophils in the blood of patients with active tuberculosis

scientific article

Progression of whole-blood transcriptional signatures from interferon-induced to neutrophil-associated patterns in severe influenza.

scientific article

Prospective validation study of prognostic biomarkers to predict adverse outcomes in patients with COVID-19: a study protocol

scientific article published on 06 January 2021

Pyogenic bacterial infections in humans with MyD88 deficiency

scientific article

Quiescent innate response to infective filariae by human Langerhans cells suggests a strategy of immune evasion

scientific article published on 19 February 2013

Relationships among murine CD11c(high) dendritic cell subsets as revealed by baseline gene expression patterns

scientific article published on July 2003

Ribosomal protein mRNAs are translationally-regulated during human dendritic cells activation by LPS.

scientific article

SP100 inhibits ETS1 activity in primary endothelial cells

scientific article

Shared and organism-specific host responses to childhood diarrheal diseases revealed by whole blood transcript profiling.

scientific article

Systemic sclerosis and lupus: points in an interferon-mediated continuum

scientific article

Systems biology approaches reveal a specific interferon-inducible signature in HTLV-1 associated myelopathy

scientific article

Systems scale interactive exploration reveals quantitative and qualitative differences in response to influenza and pneumococcal vaccines

scientific article

TLR recognition of self nucleic acids hampers glucocorticoid activity in lupus

scientific article

TLR3 controls constitutive IFN-β antiviral immunity in human fibroblasts and cortical neurons

scientific article published on 01 January 2021

TPL-2-ERK1/2 signaling promotes host resistance against intracellular bacterial infection by negative regulation of type I IFN production

scientific article published on 10 July 2013

The Blood Transcriptome of Experimental Melioidosis Reflects Disease Severity and Shows Considerable Similarity with the Human Disease

scientific article

The Relationship of Immune Cell Signatures to Patient Survival Varies within and between Tumor Types

scientific article published on 23 September 2015

The Transcriptional Signature of Active Tuberculosis Reflects Symptom Status in Extra-Pulmonary and Pulmonary Tuberculosis

scientific article

The immunity-related GTPase Irgm1 promotes the expansion of activated CD4+ T cell populations by preventing interferon-gamma-induced cell death

scientific article

Three Copies of Four Interferon Receptor Genes Underlie a Mild Type I Interferonopathy in Down Syndrome

scientific article published on 22 June 2020

Transcriptional blood signatures distinguish pulmonary tuberculosis, pulmonary sarcoidosis, pneumonias and lung cancers

scientific article

Transcriptional network predicts viral set point during acute HIV-1 infection

scientific article published on 14 June 2012

Transcriptional profiling unveils type I and II interferon networks in blood and tissues across diseases

scientific article published on 28 June 2019

Transcriptional specialization of human dendritic cell subsets in response to microbial vaccines

scientific article

Transcriptomic evidence for modulation of host inflammatory responses during febrile Plasmodium falciparum malaria

scientific article published on 10 August 2016

Transforming growth factor β signaling controls activities of human intestinal CD8(+)T suppressor cells

scientific article published on 08 December 2012

Transketolase and vitamin B1 influence on ROS-dependent neutrophil extracellular traps (NETs) formation

scientific article published on 15 August 2019

Translation of genomics research at the bedside: the promise and the challenge

scientific article published on 18 September 2008

Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites

scientific article published on 27 March 2003

Using 'collective omics data' for biomedical research training

Whole blood gene expression profiles to assess pathogenesis and disease severity in infants with respiratory syncytial virus infection

scientific article

Whole blood transcriptional profiles as a prognostic tool in complete and incomplete Kawasaki Disease.

scientific article published on 29 May 2018

ZnT8-Specific CD4+ T cells display distinct cytokine expression profiles between type 1 diabetes patients and healthy adults

scientific article

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