List of works - Timothy David Colmer

A GmAOX2b antisense gene compromises vegetative growth and seed production in soybean

scientific article published on 4 February 2012

A major locus involved in the formation of the radial oxygen loss barrier in adventitious roots of teosinte Zea nicaraguensis is located on the short-arm of chromosome 3.

scientific article published on 20 October 2016

A perspective on underwater photosynthesis in submerged terrestrial wetland plants.

scientific article

Aerenchymatous phellem in hypocotyl and roots enables O2 transport in Melilotus siculus.

scientific article

Alternative oxidase, a determinant of plant gametophyte fitness and fecundity

scientific article published on 20 April 2010

Anoxia tolerance in rice seedlings: exogenous glucose improves growth of an anoxia-'intolerant', but not of a 'tolerant' genotype

scientific article published in October 2003

Aquatic adventitious root development in partially and completely submerged wetland plants Cotula coronopifolia and Meionectes brownii ⬇️

scientific article published on March 14, 2012

Aquatic adventitious roots of the wetland plant Meionectes brownii can photosynthesize: implications for root function during flooding

article

Arabidopsis-rice-wheat gene orthologues for Na+ transport and transcript analysis in wheat-L. elongatum aneuploids under salt stress

scientific article published on 14 November 2006

Assessment of O2 diffusivity across the barrier to radial O2 loss in adventitious roots of Hordeum marinum.

scientific article published on July 2008

CO2 and O2 dynamics in leaves of aquatic plants with C3 or CAM photosynthesis - application of a novel CO2 microsensor

article

Characterization of the multigene family TaHKT 2;1 in bread wheat and the role of gene members in plant Na(+) and K(+) status

scientific article

Community recommendations on terminology and procedures used in flooding and low oxygen stress research.

scientific article published on 9 March 2017

Conditions leading to high CO2 (>5 kPa) in waterlogged-flooded soils and possible effects on root growth and metabolism.

scientific article

Contrasting dynamics of radial O2-loss barrier induction and aerenchyma formation in rice roots of two lengths.

scientific article published on 22 November 2010

Contrasting submergence tolerance in two species of stem-succulent halophytes is not determined by differences in stem internal oxygen dynamics

scientific article published on 2 December 2014

Crassulacean acid metabolism enhances underwater photosynthesis and diminishes photorespiration in the aquatic plant Isoetes australis

article

De-submergence-induced ethylene production in Rumex palustris: regulation and ecophysiological significance.

scientific article published on January 2003

Development of wheat–Lophopyrum elongatum recombinant lines for enhanced sodium ‘exclusion’ during salinity stress

scientific article published on 01 November 2009

Diel O2 Dynamics in Partially and Completely Submerged Deepwater Rice: Leaf Gas Films Enhance Internodal O2 Status, Influence Gene Expression and Accelerate Stem Elongation for 'Snorkelling' during Submergence

scientific article published on 01 May 2019

Does anoxia tolerance involve altering the energy currency towards PPi?

scientific article published on 24 April 2008

Drivers of plant traits that allow survival in wetlands

scientific article published on 03 February 2020

EST-derived SSR markers from defined regions of the wheat genome to identify Lophopyrum elongatum specific loci

scientific article published in October 2005

Early physiological flood tolerance is followed by slow post-flooding root recovery in the dryland riparian tree Eucalyptus camaldulensis subsp. refulgens.

scientific article published on 16 December 2014

Effect of Timing and Duration of Soil Saturation on Soilborne Pythium Diseases of Common Bean (Phaseolus vulgaris)

scientific article published on 01 January 2015

Efficient use of energy in anoxia-tolerant plants with focus on germinating rice seedlings

scientific article

Energetics of acclimation to NaCl by submerged, anoxic rice seedlings

scientific article published in October 2016

Energy costs of salinity tolerance in crop plants

scientific article published on 01 January 2019

Enhanced formation of aerenchyma and induction of a barrier to radial oxygen loss in adventitious roots of Zea nicaraguensis contribute to its waterlogging tolerance as compared with maize (Zea mays ssp. mays).

scientific article published in May 2012

Ethylene regulates fast apoplastic acidification and expansin A transcription during submergence-induced petiole elongation in Rumex palustris.

scientific article published in August 2005

Evidence for down-regulation of ethanolic fermentation and K+ effluxes in the coleoptile of rice seedlings during prolonged anoxia.

scientific article published in July 2001

Expression of alpha-expansin genes during root acclimations to O2 deficiency in Rumex palustris

scientific article

Flooding tolerance in halophytes.

scientific article published on 13 May 2008

Flooding tolerance of forage legumes.

scientific article published on 20 June 2016

Friend or Foe? Chloride Patterning in Halophytes

scientific article published on 14 December 2018

Gas film retention and underwater photosynthesis during field submergence of four contrasting rice genotypes.

scientific article published on 23 April 2014

Heat stress of two tropical seagrass species during low tides - impact on underwater net photosynthesis, dark respiration and diel in situ internal aeration.

scientific article published on 23 February 2016

Hydraulic redistribution: limitations for plants in saline soils.

scientific article published on 13 July 2017

Improving crop salt tolerance using transgenic approaches: an update and physiological analysis

scientific article published on 03 August 2020

In situ O2 dynamics in submerged Isoetes australis: varied leaf gas permeability influences underwater photosynthesis and internal O2.

scientific article

Internal aeration of paddy field rice (Oryza sativa) during complete submergence---importance of light and floodwater O2.

scientific article published on 6 December 2012

Investigating Drought Tolerance in Chickpea Using Genome-Wide Association Mapping and Genomic Selection Based on Whole-Genome Resequencing Data.

scientific article published on 19 February 2018

Ion transport in seminal and adventitious roots of cereals during O2 deficiency.

scientific article published on 16 September 2010

Lateral roots, in addition to adventitious roots, form a barrier to radial oxygen loss in Zea nicaraguensis and a chromosome segment introgression line in maize

scientific article published on 28 January 2020

Leaf gas films contribute to rice (Oryza sativa) submergence tolerance during saline floods

scientific article published on 23 February 2017

Leaf gas films delay salt entry and enhance underwater photosynthesis and internal aeration of Melilotus siculus submerged in saline water.

scientific article published on 14 February 2014

Leaf gas films of Spartina anglica enhance rhizome and root oxygen during tidal submergence

scientific article published on 08 September 2011

Leaf gas films, underwater photosynthesis and plant species distributions in a flood gradient.

scientific article published on 4 February 2016

Life at the boundary: photosynthesis at the soil-fluid interface. A synthesis focusing on mosses.

scientific article published on 2 February 2016

Linking oxygen availability with membrane potential maintenance and K+ retention of barley roots: implications for waterlogging stress tolerance

scientific article published on 18 August 2014

Lotus tenuis tolerates combined salinity and waterlogging: maintaining O2 transport to roots and expression of an NHX1-like gene contribute to regulation of Na+ transport

scientific article published on 23 April 2010

Lotus tenuis tolerates the interactive effects of salinity and waterlogging by 'excluding' Na+ and Cl- from the xylem

scientific article published on 17 May 2007

Manipulation of ethanol production in anoxic rice coleoptiles by exogenous glucose determines rates of ion fluxes and provides estimates of energy requirements for cell maintenance during anoxia

scientific article published in August 2005

Measuring soluble ion concentrations (Na(+), K(+), Cl(-)) in salt-treated plants

scientific article published on 01 January 2010

Mechanisms of waterlogging tolerance in wheat--a review of root and shoot physiology

scientific article

Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa).

scientific article

Morphological and physiological responses of rice (Oryza sativa) to limited phosphorus supply in aerated and stagnant solution culture.

scientific article published on 11 October 2006

Neglecting legumes has compromised human health and sustainable food production ⬇️

scientific article

Osmotic adjustment and energy limitations to plant growth in saline soil

scientific article published on 21 May 2019

Overcoming constraints to measuring O2 diffusivity and consumption of intact roots

scientific article published on 15 February 2024

Oxygen deficiency and salinity affect cell-specific ion concentrations in adventitious roots of barley (Hordeum vulgare).

scientific article published on 22 June 2015

Oxygen dynamics in submerged rice (Oryza sativa).

scientific article

Pattern of Water Use and Seed Yield under Terminal Drought in Chickpea Genotypes

scientific article

Pattern of solutes accumulated during leaf osmotic adjustment as related to duration of water deficit for wheat at the reproductive stage

scientific article published on 13 June 2011

Photosynthesis in aquatic adventitious roots of the halophytic stem-succulent Tecticornia pergranulata (formerly Halosarcia pergranulata)

scientific article published on 08 April 2008

Photosynthetic performance and fertility are repressed in GmAOX2b antisense soybean

scientific article published on 22 January 2010

Photosynthetic response to globally increasing CO2 of co-occurring temperate seagrass species.

scientific article published on 17 October 2015

Physical gills prevent drowning of many wetland insects, spiders and plants

scientific article published in March 2012

Plant responses to heterogeneous salinity: growth of the halophyte Atriplex nummularia is determined by the root-weighted mean salinity of the root zone ⬇️

scientific article published on November 3, 2012

Plant tolerance of flooding stress--recent advances.

scientific article published on 22 August 2014

Protein synthesis by rice coleoptiles during prolonged anoxia: implications for glycolysis, growth and energy utilization.

scientific article published on 18 July 2005

Regulation of intracellular pH during anoxia in rice coleoptiles in acidic and near neutral conditions

scientific article published on 10 April 2009

Regulation of root adaptive anatomical and morphological traits during low soil oxygen

scientific article published on 11 February 2020

Regulation of root traits for internal aeration and tolerance to soil waterlogging-flooding stress

scientific article published on 8 November 2017

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

scientific article published on 29 April 2019

Response of chickpea (Cicer arietinum L.) to terminal drought: leaf stomatal conductance, pod abscisic acid concentration, and seed set.

scientific article

Response to non-uniform salinity in the root zone of the halophyte Atriplex nummularia: growth, photosynthesis, water relations and tissue ion concentrations.

scientific article published on 25 June 2009

Rice acclimation to soil flooding: Low concentrations of organic acids can trigger a barrier to radial oxygen loss in roots

scientific article published on 29 May 2019

Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.

scientific article published on 2 March 2018

Root O2 consumption, CO2 production and tissue concentration profiles in chickpea, as influenced by environmental hypoxia

scientific article published on 28 January 2020

Root aeration in rice (Oryza sativa): evaluation of oxygen, carbon dioxide, and ethylene as possible regulators of root acclimatizations

scientific article published on 01 January 2006

Root phenotypes of dwarf and "overgrowth" SLN1 barley mutants, and implications for hypoxic stress tolerance

scientific article published on 15 January 2019

Root-zone hypoxia reduces growth of the tropical forage grass Urochloa humidicola in high-nutrient but not low-nutrient conditions

scientific article published on 01 November 2019

Salinity tolerance in chickpea is associated with the ability to 'exclude' Na from leaf mesophyll cells

scientific article published on 01 September 2019

Salinization of the soil solution decreases the further accumulation of salt in the root zone of the halophyte Atriplex nummularia Lindl. growing above shallow saline groundwater.

scientific article

Salt sensitivity in chickpea (Cicer arietinum L.): ions in reproductive tissues and yield components in contrasting genotypes.

scientific article published on 4 March 2015

Salt sensitivity in chickpea is determined by sodium toxicity.

scientific article published on 25 April 2016

Salt sensitivity in chickpea.

scientific article published on 14 October 2009

Salt sensitivity in chickpea: Growth, photosynthesis, seed yield components and tissue ion regulation in contrasting genotypes.

scientific article published on 19 May 2015

Salt sensitivity of the vegetative and reproductive stages in chickpea (Cicer arietinum L.): Podding is a particularly sensitive stage

scientific article published in June 2011

Salt tolerance in a Hordeum marinum-Triticum aestivum amphiploid, and its parents

scientific article published on 05 February 2007

Salt tolerance in relation to elemental concentrations in leaf cell vacuoles and chloroplasts of a C<sub>4</sub> monocotyledonous halophyte

scientific article published on 24 February 2022

Salt tolerance in wild Hordeum species is associated with restricted entry of Na+ and Cl- into the shoots

scientific article published on 12 July 2005

Sensitivity of chickpea and faba bean to root-zone hypoxia, elevated ethylene, and carbon dioxide.

scientific article published on 27 February 2018

Shoot atmospheric contact is of little importance to aeration of deeper portions of the wetland plant Meionectes brownii; submerged organs mainly acquire O2 from the water column or produce it endogenously in underwater photosynthesis

scientific article

Simultaneous Analysis of Amino and Organic Acids in Extracts of Plant Leaves astert-Butyldimethylsilyl Derivatives by Capillary Gas Chromatography

article

Simultaneous Determination by Capillary Gas Chromatography of Organic Acids, Sugars, and Sugar Alcohols in Plant Tissue Extracts as Their Trimethylsilyl Derivatives

article

Spatio-temporal relief from hypoxia and production of reactive oxygen species during bud burst in grapevine (Vitis vinifera) ⬇️

scientific article

Surviving floods: leaf gas films improve O₂ and CO₂ exchange, root aeration, and growth of completely submerged rice

scientific article

The genetics of vigour-related traits in chickpea (Cicer arietinum L.): insights from genomic data

scientific article published in 2021

The mechanism of improved aeration due to gas films on leaves of submerged rice

scientific article published on 20 March 2014

Tissue-specific root ion profiling reveals essential roles of the CAX and ACA calcium transport systems in response to hypoxia in Arabidopsis

scientific article published on 17 February 2016

Tolerance of Hordeum marinum accessions to O2 deficiency, salinity and these stresses combined.

scientific article published on 13 August 2008

Tolerance of combined submergence and salinity in the halophytic stem-succulent Tecticornia pergranulata.

scientific article published on 25 July 2008

Tolerance of four grain legume species to waterlogging, hypoxia and anoxia at germination and recovery

scientific article published on 19 August 2021

Tolerance of roots to low oxygen: 'Anoxic' cores, the phytoglobin-nitric oxide cycle, and energy or oxygen sensing

scientific article published on 26 April 2019

Tolerance of submerged germinating rice to 50-200 mM NaCl in aerated solution

scientific article published on 15 March 2013

Tolerance to partial and complete submergence in the forage legume Melilotus siculus: an evaluation of 15 accessions for petiole hyponastic response and gas-filled spaces, leaf hydrophobicity and gas films, and root phellem

scientific article published on 01 January 2019

Transfer of the barrier to radial oxygen loss in roots of Hordeum marinum to wheat (Triticum aestivum): evaluation of four H. marinum-wheat amphiploids.

scientific article published on 3 November 2010

Two key genomic regions harbour QTLs for salinity tolerance in ICCV 2 × JG 11 derived chickpea (Cicer arietinum L.) recombinant inbred lines.

scientific article published on 22 May 2015

Underwater photosynthesis and respiration in leaves of submerged wetland plants: gas films improve CO2and O2exchange

article

Underwater photosynthesis of submerged plants - recent advances and methods.

scientific article published on 21 May 2013

Use of wild relatives to improve salt tolerance in wheat

scientific article

Variable response of three Trifolium repens ecotypes to soil flooding by seawater

scientific article

Variable tolerance of wetland tree species to combined salinity and waterlogging is related to regulation of ion uptake and production of organic solutes

scientific article published in January 2006

Vegetative and reproductive growth of salt-stressed chickpea are carbon-limited: sucrose infusion at the reproductive stage improves salt tolerance

scientific article published on 2 May 2016

Visualisation by high resolution synchrotron X-ray phase contrast micro-tomography of gas films on submerged superhydrophobic leaves

scientific article

Water uptake by roots of Hordeum marinum: formation of a barrier to radial O2 loss does not affect root hydraulic conductivity.

scientific article published on 12 January 2006

Waterlogging of Winter Crops at Early and Late Stages: Impacts on Leaf Physiology, Growth and Yield

article

Waterlogging tolerance, tissue nitrogen and oxygen transport in the forage legume Melilotus siculus: a comparison of nodulated and nitrate-fed plants.

scientific article published on 17 January 2018

Wheat genotypes show contrasting abilities to recover from anoxia in spite of similar anoxic carbohydrate metabolism

scientific article published on 08 March 2007

pH regulation in anoxic rice coleoptiles at pH 3.5: biochemical pHstats and net H+ influx in the absence and presence of NOFormula

scientific article published on 15 December 2011

List of works by Timothy David Colmer

A GmAOX2b antisense gene compromises vegetative growth and seed production in soybean

A major locus involved in the formation of the radial oxygen loss barrier in adventitious roots of teosinte Zea nicaraguensis is located on the short-arm of chromosome 3.

A perspective on underwater photosynthesis in submerged terrestrial wetland plants.

Aerenchymatous phellem in hypocotyl and roots enables O2 transport in Melilotus siculus.

Alternative oxidase, a determinant of plant gametophyte fitness and fecundity

Anoxia tolerance in rice seedlings: exogenous glucose improves growth of an anoxia-'intolerant', but not of a 'tolerant' genotype

Aquatic adventitious root development in partially and completely submerged wetland plants Cotula coronopifolia and Meionectes brownii ⬇️

Aquatic adventitious roots of the wetland plant Meionectes brownii can photosynthesize: implications for root function during flooding

Arabidopsis-rice-wheat gene orthologues for Na+ transport and transcript analysis in wheat-L. elongatum aneuploids under salt stress

Assessment of O2 diffusivity across the barrier to radial O2 loss in adventitious roots of Hordeum marinum.

CO2 and O2 dynamics in leaves of aquatic plants with C3 or CAM photosynthesis - application of a novel CO2 microsensor

Characterization of the multigene family TaHKT 2;1 in bread wheat and the role of gene members in plant Na(+) and K(+) status

Community recommendations on terminology and procedures used in flooding and low oxygen stress research.

Conditions leading to high CO2 (>5 kPa) in waterlogged-flooded soils and possible effects on root growth and metabolism.

Contrasting dynamics of radial O2-loss barrier induction and aerenchyma formation in rice roots of two lengths.

Contrasting submergence tolerance in two species of stem-succulent halophytes is not determined by differences in stem internal oxygen dynamics

Crassulacean acid metabolism enhances underwater photosynthesis and diminishes photorespiration in the aquatic plant Isoetes australis

De-submergence-induced ethylene production in Rumex palustris: regulation and ecophysiological significance.

Development of wheat–Lophopyrum elongatum recombinant lines for enhanced sodium ‘exclusion’ during salinity stress

Diel O2 Dynamics in Partially and Completely Submerged Deepwater Rice: Leaf Gas Films Enhance Internodal O2 Status, Influence Gene Expression and Accelerate Stem Elongation for 'Snorkelling' during Submergence

Does anoxia tolerance involve altering the energy currency towards PPi?

Drivers of plant traits that allow survival in wetlands

EST-derived SSR markers from defined regions of the wheat genome to identify Lophopyrum elongatum specific loci

Early physiological flood tolerance is followed by slow post-flooding root recovery in the dryland riparian tree Eucalyptus camaldulensis subsp. refulgens.

Effect of Timing and Duration of Soil Saturation on Soilborne Pythium Diseases of Common Bean (Phaseolus vulgaris)

Efficient use of energy in anoxia-tolerant plants with focus on germinating rice seedlings

Energetics of acclimation to NaCl by submerged, anoxic rice seedlings

Energy costs of salinity tolerance in crop plants

Enhanced formation of aerenchyma and induction of a barrier to radial oxygen loss in adventitious roots of Zea nicaraguensis contribute to its waterlogging tolerance as compared with maize (Zea mays ssp. mays).

Ethylene regulates fast apoplastic acidification and expansin A transcription during submergence-induced petiole elongation in Rumex palustris.

Evidence for down-regulation of ethanolic fermentation and K+ effluxes in the coleoptile of rice seedlings during prolonged anoxia.

Expression of alpha-expansin genes during root acclimations to O2 deficiency in Rumex palustris

Flooding tolerance in halophytes.

Flooding tolerance of forage legumes.

Friend or Foe? Chloride Patterning in Halophytes

Gas film retention and underwater photosynthesis during field submergence of four contrasting rice genotypes.

Heat stress of two tropical seagrass species during low tides - impact on underwater net photosynthesis, dark respiration and diel in situ internal aeration.

Hydraulic redistribution: limitations for plants in saline soils.

Improving crop salt tolerance using transgenic approaches: an update and physiological analysis

In situ O2 dynamics in submerged Isoetes australis: varied leaf gas permeability influences underwater photosynthesis and internal O2.

Internal aeration of paddy field rice (Oryza sativa) during complete submergence---importance of light and floodwater O2.

Investigating Drought Tolerance in Chickpea Using Genome-Wide Association Mapping and Genomic Selection Based on Whole-Genome Resequencing Data.

Ion transport in seminal and adventitious roots of cereals during O2 deficiency.

Lateral roots, in addition to adventitious roots, form a barrier to radial oxygen loss in Zea nicaraguensis and a chromosome segment introgression line in maize

Leaf gas films contribute to rice (Oryza sativa) submergence tolerance during saline floods

Leaf gas films delay salt entry and enhance underwater photosynthesis and internal aeration of Melilotus siculus submerged in saline water.

Leaf gas films of Spartina anglica enhance rhizome and root oxygen during tidal submergence

Leaf gas films, underwater photosynthesis and plant species distributions in a flood gradient.

Life at the boundary: photosynthesis at the soil-fluid interface. A synthesis focusing on mosses.

Linking oxygen availability with membrane potential maintenance and K+ retention of barley roots: implications for waterlogging stress tolerance

Lotus tenuis tolerates combined salinity and waterlogging: maintaining O2 transport to roots and expression of an NHX1-like gene contribute to regulation of Na+ transport

Lotus tenuis tolerates the interactive effects of salinity and waterlogging by 'excluding' Na+ and Cl- from the xylem

Manipulation of ethanol production in anoxic rice coleoptiles by exogenous glucose determines rates of ion fluxes and provides estimates of energy requirements for cell maintenance during anoxia

Measuring soluble ion concentrations (Na(+), K(+), Cl(-)) in salt-treated plants

Mechanisms of waterlogging tolerance in wheat--a review of root and shoot physiology

Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa).

Morphological and physiological responses of rice (Oryza sativa) to limited phosphorus supply in aerated and stagnant solution culture.

Neglecting legumes has compromised human health and sustainable food production ⬇️

Osmotic adjustment and energy limitations to plant growth in saline soil

Overcoming constraints to measuring O2 diffusivity and consumption of intact roots

Oxygen deficiency and salinity affect cell-specific ion concentrations in adventitious roots of barley (Hordeum vulgare).

Oxygen dynamics in submerged rice (Oryza sativa).

Pattern of Water Use and Seed Yield under Terminal Drought in Chickpea Genotypes

Pattern of solutes accumulated during leaf osmotic adjustment as related to duration of water deficit for wheat at the reproductive stage

Photosynthesis in aquatic adventitious roots of the halophytic stem-succulent Tecticornia pergranulata (formerly Halosarcia pergranulata)

Photosynthetic performance and fertility are repressed in GmAOX2b antisense soybean

Photosynthetic response to globally increasing CO2 of co-occurring temperate seagrass species.

Physical gills prevent drowning of many wetland insects, spiders and plants

Plant responses to heterogeneous salinity: growth of the halophyte Atriplex nummularia is determined by the root-weighted mean salinity of the root zone ⬇️

Plant tolerance of flooding stress--recent advances.

Protein synthesis by rice coleoptiles during prolonged anoxia: implications for glycolysis, growth and energy utilization.

Regulation of intracellular pH during anoxia in rice coleoptiles in acidic and near neutral conditions

Regulation of root adaptive anatomical and morphological traits during low soil oxygen

Regulation of root traits for internal aeration and tolerance to soil waterlogging-flooding stress

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

Response of chickpea (Cicer arietinum L.) to terminal drought: leaf stomatal conductance, pod abscisic acid concentration, and seed set.

Response to non-uniform salinity in the root zone of the halophyte Atriplex nummularia: growth, photosynthesis, water relations and tissue ion concentrations.

Rice acclimation to soil flooding: Low concentrations of organic acids can trigger a barrier to radial oxygen loss in roots

Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.