List of works - Peter Ruoff

A basic set of homeostatic controller motifs

scientific article published on November 2012

A nitrate-induced frq-less oscillator in Neurospora crassa

scientific article published in August 2004

A rapid method for preparation of the cerebrospinal fluid proteome

scientific article published on 03 December 2014

Acetic acid treatment in S. cerevisiae creates significant energy deficiency and nutrient starvation that is dependent on the activity of the mitochondrial transcriptional complex Hap2-3-4-5

scientific article (publication date: 2012)

An unusually rapid light-induced nitrate reductase mRNA pulse and circadian oscillations

scientific article published on 01 November 1989

Assessing the presence of female DNA on post-coital penile swabs: Relevance to the investigation of sexual assault

scientific article published on 8 March 2012

Biological timing and the clock metaphor: oscillatory and hourglass mechanisms

scientific article

Circadian oscillators in eukaryotes

scientific article published on September 2010

Circadian period lengths of lipid synthesis mutants (cel, chol-1) of Neurospora show defective temperature, but intact pH-compensation.

scientific article

Circadian rhythmicity by autocatalysis

scientific article

Circadian rhythms and protein turnover: the effect of temperature on the period lengths of clock mutants simulated by the Goodwin oscillator

scientific article published in November 1996

Computer controlled automated assay for comprehensive studies of enzyme kinetic parameters

scientific article

Considerably Lower Levels of Hypocretin-1 in Cerebrospinal Fluid Is Revealed by a Novel Mass Spectrometry Method Compared with Standard Radioimmunoassay

scientific article published on 01 July 2019

Detection of small bioactive peptides from Atlantic herring (Clupea harengus L.).

scientific article

Diurnal expression of clock genes in pineal gland and brain and plasma levels of melatonin and cortisol in Atlantic salmon parr and smolts.

scientific article published on October 2010

Effect of continuous light on daily levels of plasma melatonin and cortisol and expression of clock genes in pineal gland, brain, and liver in atlantic salmon postsmolts

scientific article

Evidence for increased proton dissociation in low-activity forms of dephosphorylated squash-leaf nitrate reductase

scientific article published on 01 September 1997

Excision of uracil from DNA by the hyperthermophilic Afung protein is dependent on the opposite base and stimulated by heat-induced transition to a more open structure.

scientific article published on December 2001

Frequency switching between oscillatory homeostats and the regulation of p53

scientific article published on 20 May 2020

Heat shock and oxidative stress-induced exposure of hydrophobic protein domains as common signal in the induction of hsp68.

scientific article

Homeostatic controllers compensating for growth and perturbations

scientific article published on 12 August 2019

How can yeast cells decide between three activated MAP kinase pathways? A model approach

scientific article

Hysteretic enzyme adaptation to environmental pH: change in storage pH of alkaline phosphatase leads to a pH-optimum in the opposite direction to the applied change

scientific article published on 01 March 1999

Integrating fluctuating nitrate uptake and assimilation to robust homeostasis.

scientific article published on 6 December 2011

Lithium differentially affects clock gene expression in serum-shocked NIH-3T3 cells.

scientific article published on 13 September 2010

Lithium leads to an increased FRQ protein stability and to a partial loss of temperature compensation in the Neurospora circadian clock

scientific article published in October 2006

Molecular oxygen as electron acceptor in the NADH-nitrate reductase system

scientific article published on 01 November 1990

NADH substrate inhibition and enhanced thermal stability of higher plant nitrate reductase immobilized via a monoclonal antibody

scientific article published on 01 June 1989

Nutrient depletion as a key factor for manipulating gene expression and product formation in different branches of the flavonoid pathway

scientific article published on 29 October 2007

On the relationship between sensitivity coefficients and transfer functions of reaction kinetic networks

scientific article published on 27 April 2011

Opposite-base dependent excision of 5-formyluracil from DNA by hSMUG1.

scientific article

PER/TIM-mediated amplification, gene dosage effects and temperature compensation in an interlocking-feedback loop model of the Drosophila circadian clock

scientific article published in November 2005

Performance of Homeostatic Controller Motifs Dealing with Perturbations of Rapid Growth and Depletion

scientific article published on 2 June 2017

Predicting perfect adaptation motifs in reaction kinetic networks.

scientific article

Robust adaptation and homeostasis by autocatalysis

scientific article published on 30 April 2012

Robust concentration and frequency control in oscillatory homeostats

scientific article published in 2014

Semi-algebraic optimization of temperature compensation in a general switch-type negative feedback model of circadian clocks

scientific article published on 18 August 2007

Simulating dark expressions and interactions of frq and wc-1 in the Neurospora circadian clock.

scientific article

Splice Site Prediction Using Artificial Neural Networks

scholarly article by ∅ystein Johansen et al published 2009 in Lecture Notes in Computer Science

Structural basis for enzymatic excision of N1-methyladenine and N3-methylcytosine from DNA

scientific article

Studying adaptation and homeostatic behaviors of kinetic networks by using MATLAB

scientific article published on 01 January 2011

SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation.

scientific article published in February 2009

Systems biology of the modified branched Entner-Doudoroff pathway in Sulfolobus solfataricus.

scientific article published on 10 July 2017

Temperature adaptation of house keeping and heat shock gene expression in Neurospora crassa

article

Temperature and nitrogen effects on regulators and products of the flavonoid pathway: experimental and kinetic model studies

scientific article published on 25 November 2008

Temperature compensation through systems biology

scientific article published on 12 January 2007

Temperature dependency and temperature compensation in a model of yeast glycolytic oscillations.

scientific article published in November 2003

Temperature effect on entrainment, phase shifting, and amplitude of circadian clocks and its molecular bases.

scientific article

The Goodwin model: simulating the effect of light pulses on the circadian sporulation rhythm of Neurospora crassa.

scientific article

The Organization of Controller Motifs Leading to Robust Plant Iron Homeostasis

scientific article published on 22 January 2016

The control of the controller: molecular mechanisms for robust perfect adaptation and temperature compensation.

scientific article published on September 2009

The nitrate reductase circadian system. The central clock dogma contra multiple oscillatory feedback loops.

scientific article

Transepithelial glucose transport and Na+/K+ homeostasis in enterocytes: an integrative model

scientific article

Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.

scientific article

List of works by Peter Ruoff

A basic set of homeostatic controller motifs

A nitrate-induced frq-less oscillator in Neurospora crassa

A rapid method for preparation of the cerebrospinal fluid proteome

Acetic acid treatment in S. cerevisiae creates significant energy deficiency and nutrient starvation that is dependent on the activity of the mitochondrial transcriptional complex Hap2-3-4-5

An unusually rapid light-induced nitrate reductase mRNA pulse and circadian oscillations

Assessing the presence of female DNA on post-coital penile swabs: Relevance to the investigation of sexual assault

Biological timing and the clock metaphor: oscillatory and hourglass mechanisms

Circadian oscillators in eukaryotes

Circadian period lengths of lipid synthesis mutants (cel, chol-1) of Neurospora show defective temperature, but intact pH-compensation.

Circadian rhythmicity by autocatalysis

Circadian rhythms and protein turnover: the effect of temperature on the period lengths of clock mutants simulated by the Goodwin oscillator

Computer controlled automated assay for comprehensive studies of enzyme kinetic parameters

Considerably Lower Levels of Hypocretin-1 in Cerebrospinal Fluid Is Revealed by a Novel Mass Spectrometry Method Compared with Standard Radioimmunoassay

Detection of small bioactive peptides from Atlantic herring (Clupea harengus L.).

Diurnal expression of clock genes in pineal gland and brain and plasma levels of melatonin and cortisol in Atlantic salmon parr and smolts.

Effect of continuous light on daily levels of plasma melatonin and cortisol and expression of clock genes in pineal gland, brain, and liver in atlantic salmon postsmolts

Evidence for increased proton dissociation in low-activity forms of dephosphorylated squash-leaf nitrate reductase

Excision of uracil from DNA by the hyperthermophilic Afung protein is dependent on the opposite base and stimulated by heat-induced transition to a more open structure.

Frequency switching between oscillatory homeostats and the regulation of p53

Heat shock and oxidative stress-induced exposure of hydrophobic protein domains as common signal in the induction of hsp68.

Homeostatic controllers compensating for growth and perturbations

How can yeast cells decide between three activated MAP kinase pathways? A model approach

Hysteretic enzyme adaptation to environmental pH: change in storage pH of alkaline phosphatase leads to a pH-optimum in the opposite direction to the applied change

Integrating fluctuating nitrate uptake and assimilation to robust homeostasis.

Lithium differentially affects clock gene expression in serum-shocked NIH-3T3 cells.

Lithium leads to an increased FRQ protein stability and to a partial loss of temperature compensation in the Neurospora circadian clock

Molecular oxygen as electron acceptor in the NADH-nitrate reductase system

NADH substrate inhibition and enhanced thermal stability of higher plant nitrate reductase immobilized via a monoclonal antibody

Nutrient depletion as a key factor for manipulating gene expression and product formation in different branches of the flavonoid pathway

On the relationship between sensitivity coefficients and transfer functions of reaction kinetic networks

Opposite-base dependent excision of 5-formyluracil from DNA by hSMUG1.

PER/TIM-mediated amplification, gene dosage effects and temperature compensation in an interlocking-feedback loop model of the Drosophila circadian clock

Performance of Homeostatic Controller Motifs Dealing with Perturbations of Rapid Growth and Depletion

Predicting perfect adaptation motifs in reaction kinetic networks.

Robust adaptation and homeostasis by autocatalysis

Robust concentration and frequency control in oscillatory homeostats

Semi-algebraic optimization of temperature compensation in a general switch-type negative feedback model of circadian clocks

Simulating dark expressions and interactions of frq and wc-1 in the Neurospora circadian clock.

Splice Site Prediction Using Artificial Neural Networks

Structural basis for enzymatic excision of N1-methyladenine and N3-methylcytosine from DNA

Studying adaptation and homeostatic behaviors of kinetic networks by using MATLAB

SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation.

Systems biology of the modified branched Entner-Doudoroff pathway in Sulfolobus solfataricus.

Temperature adaptation of house keeping and heat shock gene expression in Neurospora crassa

Temperature and nitrogen effects on regulators and products of the flavonoid pathway: experimental and kinetic model studies

Temperature compensation through systems biology

Temperature dependency and temperature compensation in a model of yeast glycolytic oscillations.

Temperature effect on entrainment, phase shifting, and amplitude of circadian clocks and its molecular bases.

The Goodwin model: simulating the effect of light pulses on the circadian sporulation rhythm of Neurospora crassa.

The Organization of Controller Motifs Leading to Robust Plant Iron Homeostasis

The control of the controller: molecular mechanisms for robust perfect adaptation and temperature compensation.

The nitrate reductase circadian system. The central clock dogma contra multiple oscillatory feedback loops.

Transepithelial glucose transport and Na+/K+ homeostasis in enterocytes: an integrative model

Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.

pH homeostasis of the circadian sporulation rhythm in clock mutants of Neurospora crassa