List of works - John Vogel

A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat

scientific article

A Xyloglucan Backbone 6-O-Acetyltransferase from Brachypodium distachyon Modulates Xyloglucan Xylosylation

scientific article

A division in PIN-mediated auxin patterning during organ initiation in grasses

scientific article (publication date: 2014)

A truncated NLR protein, TIR-NBS2, is required for activated defense responses in the exo70B1 mutant

scientific article published on 24 January 2015

Africa's wild C4 plant foods and possible early hominid diets

scientific article

An SSR-based genetic linkage map of the model grass Brachypodium distachyon

article

Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon

scientific article

Application of Brachypodium to the genetic improvement of wheat roots

scientific article published on 30 March 2012

Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought

BdCESA7, BdCESA8, and BdPMT Utility Promoter Constructs for Targeted Expression to Secondary Cell-Wall-Forming Cells of Grasses

scientific article published on 04 February 2016

Brachypodium as a model for the grasses: today and the future

scientific article published on 19 July 2011

Brachypodium as an emerging model for cereal-pathogen interactions

scientific article

Brachypodium distachyon

scientific article

Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses

scientific article

Brachypodium distachyon genomics for sustainable food and fuel production

scientific article published on 31 March 2010

Brachypodium sylvaticum, a model for perennial grasses: transformation and inbred line development

scientific article

Brachypodium: 20 years as a grass biology model system; the way forward?

scientific article published in 2022

CO2 response screen in grass Brachypodium reveals the key role of a MAP kinase in CO2-triggered stomatal closure

scientific article published in 2024

Climatic influence on the isotopic composition of bone nitrogen

scientific article published in Nature

Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon

scientific article published on 20 May 2011

Conserved requirement for a plant host cell protein in powdery mildew pathogenesis.

scientific article

Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics

scientific article

Contributors

scientific article published in 1993

Correction of a Radiocarbon Date from Kangkara

scientific article published in December 1990

Cross-species functional diversity within the PIN auxin efflux protein family

scientific article published on 24 October 2017

Cross-species functional diversity within the PIN auxin efflux protein family

Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon

scientific article

Digital imaging approaches for phenotyping whole plant nitrogen and phosphorus response in Brachypodium distachyon.

scientific article published on 4 June 2014

Direct Dating and Identity of Fibre Temper in Pre-Contact Bushman (Basarwa) Pottery

EDR2 negatively regulates salicylic acid-based defenses and cell death during powdery mildew infections of Arabidopsis thaliana

scientific article (publication date: 6 July 2007)

EST sequencing and phylogenetic analysis of the model grass Brachypodium distachyon

scientific article

Exploiting the Brachypodium Tool Box in cereal and grass research.

scientific article published on 31 May 2011

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.

scientific article published on 19 December 2017

Fibre Temper in Later Stone Age Ceramics from the Upper Karoo

scientific article published in December 1996

Fine mapping of the Bsr1 barley stripe mosaic virus resistance gene in the model grass Brachypodium distachyon

scientific article

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems

scientific article (publication date: 19 August 2015)

Generation and characterization of the Western Regional Research Center Brachypodium T-DNA insertional mutant collection

scientific article

Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon.

scientific article

Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines.

scientific article published on 15 July 2014

Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon

scientific article published on 01 September 2018

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

scientific article published on 29 July 2020

Grasses use an alternatively wired bHLH transcription factor network to establish stomatal identity

scientific article

High-efficiency Agrobacterium-mediated transformation of Brachypodium distachyon inbred line Bd21-3.

scientific article

Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil

scientific article published on 30 October 2019

Isolation and characterization of powdery mildew-resistant Arabidopsis mutants

scholarly article

Late Quaternary Paleotemperatures Derived from a Speleothem from Cango Caves, Cape Province, South Africa

Loss of a callose synthase results in salicylic acid-dependent disease resistance

scientific article published in August 2003

Metabotyping as a Stopover in Genome-to-Phenome Mapping

scientific article published in Scientific Reports

Molecular, morphological, and cytological analysis of diverse Brachypodium distachyon inbred lines.

scientific article

Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass

scientific article published on 24 January 2019

Mutations in PMR5 result in powdery mildew resistance and altered cell wall composition

scientific article published in December 2004

Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv

scientific article published on 5 June 2009

On a new radiocarbon chronology for Africa south of the Equator

article

Overexpression of the maize Corngrass1 microRNA prevents flowering, improves digestibility, and increases starch content of switchgrass ⬇️

scientific article (publication date: 18 October 2011)

PMR5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens

scientific article published on 12 October 2019

PMR6, a pectate lyase-like gene required for powdery mildew susceptibility in Arabidopsis

scientific article

Patterns in the Age and Context of Rock Art in the Northern Cape

scientific article published in December 1989

Phylogenetic, Molecular, and Biochemical Characterization of Caffeic Acid o-Methyltransferase Gene Family in Brachypodium distachyon

scientific article published on 17 January 2013

PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution

scientific article published on 12 July 2019

Recessive and dominant mutations in the ethylene biosynthetic gene ACS5 of Arabidopsis confer cytokinin insensitivity and ethylene overproduction, respectively.

scientific article

Relationship between spatial and genetic distance in Agrobacterium spp. in 1 cubic centimeter of soil

scientific article

Repeated migration, interbreeding and bottlenecking shaped the phylogeography of the selfing grass Brachypodium stacei

scientific article published in 2024

Selection and phenotypic characterization of a core collection of Brachypodium distachyon inbred lines

scientific article

Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection

scientific article

Spatial Distribution of Radiocarbon Dates for the Iron Age in Southern Africa

scientific article published in December 1999

Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat

scientific article

The Temporal Distribution of Radiocarbon Dates for the Iron Age in Southern Africa

scientific article published in December 1995

The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences

scientific article published on 6 November 2007

The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum

scientific article published in 2023

Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses

scientific article published on 05 December 2019

Twentieth century changes in montane vegetation in the eastern Free State, South Africa, derived from palynology of hyrax dung middens

scientific article published in February 1999

Unique aspects of the grass cell wall

scientific article published on 21 April 2008

Update on the genomics and basic biology of Brachypodium: International Brachypodium Initiative (IBI).

scientific article published on 7 June 2014

Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments.

scientific article published on 14 May 2015

List of works by John Vogel

A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat

A Xyloglucan Backbone 6-O-Acetyltransferase from Brachypodium distachyon Modulates Xyloglucan Xylosylation

A division in PIN-mediated auxin patterning during organ initiation in grasses

A truncated NLR protein, TIR-NBS2, is required for activated defense responses in the exo70B1 mutant

Africa's wild C4 plant foods and possible early hominid diets

An SSR-based genetic linkage map of the model grass Brachypodium distachyon

Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon

Application of Brachypodium to the genetic improvement of wheat roots

Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought

BdCESA7, BdCESA8, and BdPMT Utility Promoter Constructs for Targeted Expression to Secondary Cell-Wall-Forming Cells of Grasses

Brachypodium as a model for the grasses: today and the future

Brachypodium as an emerging model for cereal-pathogen interactions

Brachypodium distachyon

Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses

Brachypodium distachyon genomics for sustainable food and fuel production

Brachypodium sylvaticum, a model for perennial grasses: transformation and inbred line development

Brachypodium: 20 years as a grass biology model system; the way forward?

CO2 response screen in grass <i>Brachypodium</i> reveals the key role of a MAP kinase in CO2-triggered stomatal closure

Climatic influence on the isotopic composition of bone nitrogen

Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon

Conserved requirement for a plant host cell protein in powdery mildew pathogenesis.

Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics

Contributors

Correction of a Radiocarbon Date from Kangkara

Cross-species functional diversity within the PIN auxin efflux protein family

Cross-species functional diversity within the PIN auxin efflux protein family

Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon

Digital imaging approaches for phenotyping whole plant nitrogen and phosphorus response in Brachypodium distachyon.

Direct Dating and Identity of Fibre Temper in Pre-Contact Bushman (Basarwa) Pottery

EDR2 negatively regulates salicylic acid-based defenses and cell death during powdery mildew infections of Arabidopsis thaliana

EST sequencing and phylogenetic analysis of the model grass Brachypodium distachyon

Exploiting the Brachypodium Tool Box in cereal and grass research.

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.

Fibre Temper in Later Stone Age Ceramics from the Upper Karoo

Fine mapping of the Bsr1 barley stripe mosaic virus resistance gene in the model grass Brachypodium distachyon

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems

Generation and characterization of the Western Regional Research Center Brachypodium T-DNA insertional mutant collection

Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon.

Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines.

Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

Grasses use an alternatively wired bHLH transcription factor network to establish stomatal identity

High-efficiency Agrobacterium-mediated transformation of Brachypodium distachyon inbred line Bd21-3.

Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil

Isolation and characterization of powdery mildew-resistant Arabidopsis mutants

Late Quaternary Paleotemperatures Derived from a Speleothem from Cango Caves, Cape Province, South Africa

Loss of a callose synthase results in salicylic acid-dependent disease resistance

Metabotyping as a Stopover in Genome-to-Phenome Mapping

Molecular, morphological, and cytological analysis of diverse Brachypodium distachyon inbred lines.

Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass

Mutations in PMR5 result in powdery mildew resistance and altered cell wall composition

Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv

On a new radiocarbon chronology for Africa south of the Equator

Overexpression of the maize Corngrass1 microRNA prevents flowering, improves digestibility, and increases starch content of switchgrass ⬇️

PMR5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens

PMR6, a pectate lyase-like gene required for powdery mildew susceptibility in Arabidopsis

Patterns in the Age and Context of Rock Art in the Northern Cape

Phylogenetic, Molecular, and Biochemical Characterization of Caffeic Acid o-Methyltransferase Gene Family in Brachypodium distachyon

PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution

Recessive and dominant mutations in the ethylene biosynthetic gene ACS5 of Arabidopsis confer cytokinin insensitivity and ethylene overproduction, respectively.

Relationship between spatial and genetic distance in Agrobacterium spp. in 1 cubic centimeter of soil

Repeated migration, interbreeding and bottlenecking shaped the phylogeography of the selfing grass <i>Brachypodium stacei</i>

Selection and phenotypic characterization of a core collection of Brachypodium distachyon inbred lines

Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection

Spatial Distribution of Radiocarbon Dates for the Iron Age in Southern Africa

Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat

The Temporal Distribution of Radiocarbon Dates for the Iron Age in Southern Africa

The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences

The reference genome and abiotic stress responses of the model perennial grass <i>Brachypodium sylvaticum</i>

Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses

Twentieth century changes in montane vegetation in the eastern Free State, South Africa, derived from palynology of hyrax dung middens

Unique aspects of the grass cell wall

Update on the genomics and basic biology of Brachypodium: International Brachypodium Initiative (IBI).

Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments.