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List of works by Brandon T. Ruotolo

24th Sanibel Conference on mass spectrometry: Mass spectrometry technologies for structural biology

scientific article published on 01 December 2012

A Modified Drift Tube Ion Mobility-Mass Spectrometer for Charge-Multiplexed Collision-Induced Unfolding

scientific article published on 13 June 2019

A Multidimensional Analytical Comparison of Remicade and the Biosimilar Remsima

scientific article published on April 2017

A Novel Ion Pseudo-trapping Phenomenon within Traveling Wave Ion Guides

scientific article published on 05 March 2020

A Redox-Active, Compact Molecule for Cross-Linking Amyloidogenic Peptides into Nontoxic, Off-Pathway Aggregates: In Vitro and In Vivo Efficacy and Molecular Mechanisms

scientific article

A Semi-Empirical Framework for Interpreting Traveling Wave Ion Mobility Arrival Time Distributions

scientific article published on 27 February 2019

A rationally designed small molecule for identifying an in vivo link between metal-amyloid-β complexes and the pathogenesis of Alzheimer's disease

scientific article

A single subunit directs the assembly of the Escherichia coli DNA sliding clamp loader.

scientific article published on March 2010

A study of peptide-peptide interactions using MALDI ion mobility o-TOF and ESI mass spectrometry

scientific article

A two-site mechanism for the inhibition of IAPP amyloidogenesis by zinc

scientific article published on 17 May 2011

Activation state-selective kinase inhibitor assay based on ion mobility-mass spectrometry

scientific article

Alternate Dissociation Pathways Identified in Charge-Reduced Protein Complex Ions

scientific article published on 01 June 2010

Amyloid-β protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease

scientific article

Amyloid-β-neuropeptide interactions assessed by ion mobility-mass spectrometry

scientific article published on 24 April 2013

An Algorithm for Building Multi-State Classifiers Based on Collision-Induced Unfolding Data

scientific article published on 30 July 2019

Analysis of a soluble (UreD:UreF:UreG)2 accessory protein complex and its interactions with Klebsiella aerogenes urease by mass spectrometry

scientific article

Analysis of phosphorylated peptides by ion mobility-mass spectrometry

scientific article published in November 2004

Aspects of native proteins are retained in vacuum.

scientific article

Bound anions differentially stabilize multiprotein complexes in the absence of bulk solvent

scientific article

Bound cations significantly stabilize the structure of multiprotein complexes in the gas phase

scientific article

CIUSuite 2: Next-Generation Software for the Analysis of Gas-Phase Protein Unfolding Data

scientific article published on 06 February 2019

CIUSuite: A Quantitative Analysis Package for Collision Induced Unfolding Measurements of Gas-Phase Protein Ions.

scientific article published on 21 October 2015

Characterization of symmetric complexes of nerve growth factor and the ectodomain of the pan-neurotrophin receptor, p75NTR

scientific article published on 11 July 2005

Characterizing the resolution and accuracy of a second-generation traveling-wave ion mobility separator for biomolecular ions

scientific article published in 2011

Chemical Probes and Engineered Constructs Reveal a Detailed Unfolding Mechanism for a Solvent-Free Multidomain Protein

scientific article published on 13 December 2016

Collision Induced Unfolding Classifies Ligands Bound to the Integral Membrane Translocator Protein

scientific article published on 05 December 2019

Collision Induced Unfolding of Intact Antibodies: Rapid Characterization of Disulfide Bonding Patterns, Glycosylation, and Structures

scientific article published on 27 October 2015

Collision cross sections of proteins and their complexes: a calibration framework and database for gas-phase structural biology

scientific article published on 27 October 2010

Collision-Induced Unfolding Reveals Unique Fingerprints for Remote Protein Interaction Sites in the KIX Regulation Domain

scientific article published on 22 August 2018

Collisional and Coulombic unfolding of gas-phase proteins: high correlation to their domain structures in solution.

scientific article

Collisional unfolding of multiprotein complexes reveals cooperative stabilization upon ligand binding

scientific article published on 27 May 2015

Complex Formed between Intramembrane Metalloprotease SpoIVFB and Its Substrate, Pro-σK

scientific article published on 7 March 2016

Coupling microdroplet microreactors with mass spectrometry: reading the contents of single droplets online.

scientific article published in January 2009

Distinguishing between phosphorylated and nonphosphorylated peptides with ion mobility-mass spectrometry

scientific article published in July 2002

Dramatically stabilizing multiprotein complex structure in the absence of bulk water using tuned Hofmeister salts

scientific article

Evidence for a 1,3-Dipolar Cyclo-addition Mechanism in the Decarboxylation of Phenylacrylic Acids Catalyzed by Ferulic Acid Decarboxylase.

scientific article published on 28 July 2017

Evidence for macromolecular protein rings in the absence of bulk water.

scientific article

Exploring the reactivity of flavonoid compounds with metal-associated amyloid-β species

scientific article published on 22 March 2012

Fixed-Charge Trimethyl Pyrilium Modification for Enabling Enhanced Top-Down Mass Spectrometry Sequencing of Intact Protein Complexes. ⬇️

scientific article published on 23 January 2018

Gas-phase unfolding and disassembly reveals stability differences in ligand-bound multiprotein complexes

scientific article

Hofmeister salts recover a misfolded multiprotein complex for subsequent structural measurements in the gas phase

scientific article published on July 2013

Hydrogen/deuterium exchange-mass spectrometry analysis of high concentration biotherapeutics: application to phase-separated antibody formulations

scientific article published on 19 March 2019

IMTBX and Grppr: Software for Top-Down Proteomics Utilizing Ion Mobility-Mass Spectrometry

scientific article

Insights into antiamyloidogenic properties of the green tea extract (-)-epigallocatechin-3-gallate toward metal-associated amyloid-β species

scientific article published on 20 February 2013

Integrating ion mobility mass spectrometry with molecular modelling to determine the architecture of multiprotein complexes

scientific article

Integrating mass spectrometry of intact protein complexes into structural proteomics ⬇️

scientific article published on May 1, 2012

Integrative modelling coupled with ion mobility mass spectrometry reveals structural features of the clamp loader in complex with single-stranded DNA binding protein.

scientific article

Ion Mobility Mass Spectrometry

article

Ion Mobility-Mass Spectrometry Differentiates Protein Quaternary Structures Formed in Solution and in Electrospray Droplets

scientific article published on 24 June 2015

Ion Mobility-Mass Spectrometry Reveals Highly-Compact Intermediates in the Collision Induced Dissociation of Charge-Reduced Protein Complexes

scientific article published on September 2015

Ion Mobility-Mass Spectrometry Reveals a Dipeptide That Acts as a Molecular Chaperone for Amyloid β.

scientific article

Ion Mobility-Mass Spectrometry Reveals the Influence of Subunit Packing and Charge on the Dissociation of Multiprotein Complexes

scientific article published in December 2010

Ion mobility-mass spectrometry applied to cyclic peptide analysis: conformational preferences of gramicidin S and linear analogs in the gas phase

scientific article

Ion mobility-mass spectrometry for structural proteomics

scientific article

Ion mobility-mass spectrometry of charge-reduced protein complexes reveals general trends in the collisional ejection of compact subunits

scientific article published on 01 October 2015

Ion mobility-mass spectrometry of intact protein--ligand complexes for pharmaceutical drug discovery and development.

scientific article

Ion mobility-mass spectrometry reveals conformational changes in charge reduced multiprotein complexes.

scientific article published on 16 July 2011

Ion mobility-mass spectrometry reveals long-lived, unfolded intermediates in the dissociation of protein complexes

scientific article

Ion mobility–mass spectrometry analysis of large protein complexes

scientific article published on 19 June 2008

Kinetic Analysis of Transient Intermediates in the Mechanism of Prenyl-Flavin-Dependent Ferulic Acid Decarboxylase

scientific article published on 19 December 2020

Mass measurements of increased accuracy resolve heterogeneous populations of intact ribosomes

scientific article published on 01 September 2006

Mass spectrometry: come of age for structural and dynamical biology.

scientific article

Methodology for measuring conformation of solvent-disrupted protein subunits using T-WAVE ion mobility MS: an investigation into eukaryotic initiation factors

scientific article published on 20 May 2009

Observation of conserved solution-phase secondary structure in gas-phase tryptic peptides

scientific article published on 01 April 2002

Oligonucleotide analysis with MALDI-ion-mobility-TOFMS.

scientific article

Peak capacity of ion mobility mass spectrometry: separation of peptides in helium buffer gas

scientific article published on 01 December 2002

Peak capacity of ion mobility mass spectrometry: the utility of varying drift gas polarizability for the separation of tryptic peptides

scientific article published in April 2004

Pervasive Charge Solvation Permeates Native-like Protein Ions and Dramatically Influences Top-down Sequencing Data

scientific article published on 30 March 2020

Protein complexes in the gas phase: technology for structural genomics and proteomics

scientific article published on 25 July 2007

Quadrupole-time-of-flight mass spectrometer modified for higher-energy dissociation reduces protein assemblies to peptide fragments.

scientific article published in February 2009

Reactivity of diphenylpropynone derivatives toward metal-associated amyloid-β species

scientific article published on 15 November 2012

Resolution equations for high-field ion mobility

scientific article published in September 2004

Resolution of oligomeric species during the aggregation of Aβ1-40 using (19)F NMR.

scientific article published on 8 March 2013

Robotically assisted titration coupled to ion mobility-mass spectrometry reveals the interface structures and analysis parameters critical for multiprotein topology mapping

scientific article

SERF engages in a fuzzy complex that accelerates primary nucleation of amyloid proteins

scientific article published on 28 October 2019

Separating and visualising protein assemblies by means of preparative mass spectrometry and microscopy.

scientific article published on 15 March 2010

Structural basis for the inhibition of activin signalling by follistatin.

scientific article

Subunit architecture of intact protein complexes from mass spectrometry and homology modeling.

scientific article

Subunit architecture of multiprotein assemblies determined using restraints from gas-phase measurements

scientific article

Surface-induced dissociation on a MALDI-ion mobility-orthogonal time-of-flight mass spectrometer: sequencing peptides from an "in-solution" protein digest.

scientific article published in May 2001

Tandem Mass Spectrometry Reveals the Quaternary Organization of Macromolecular Assemblies

scientific article published in June 2006

Tandem differential mobility analysis-mass spectrometry reveals partial gas-phase collapse of the GroEL complex

scientific article

The influence and utility of varying field strength for the separation of tryptic peptides by ion mobility-mass spectrometry

scientific article published in February 2005

The structure of gas-phase bradykinin fragment 1-5 (RPPGF) ions: an ion mobility spectrometry and H/D exchange ion-molecule reaction chemistry study

scientific article

Traveling-wave Ion Mobility-Mass Spectrometry Reveals Additional Mechanistic Details in the Stabilization of Protein Complex Ions through Tuned Salt Additives

scientific article

Variable-Velocity Traveling-Wave Ion Mobility Separation Enhancing Peak Capacity for Data-Independent Acquisition Proteomics.

scientific article published on 9 May 2017

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