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List of works by Xiaowei Zhuang

3D multicolor super-resolution imaging offers improved accuracy in neuron tracing

scientific article

A PIK3C3-ankyrin-B-dynactin pathway promotes axonal growth and multiorganelle transport

scientific article

A high-density 3D localization algorithm for stochastic optical reconstruction microscopy

scientific article

Actin, Spectrin, and Associated Proteins Form a Periodic Cytoskeletal Structure in Axons ⬇️

scientific article published on December 13, 2012

An RNA-aptamer-based two-color CRISPR labeling system

scientific article published on 27 May 2016

Analyzing Single Molecule Localization Microscopy Data Using Cubic Splines.

scientific article

Assembly of endocytic machinery around individual influenza viruses during viral entry

scientific article

Author Correction: Multiplexed imaging of high-density libraries of RNAs with MERFISH and expansion microscopy.

scientific article published on 19 April 2018

Blind sparse inpainting reveals cytoskeletal filaments with sub-Nyquist localization

Breaking the diffraction barrier: super-resolution imaging of cells

scientific article

CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains

scientific article published on 17 May 2021

CatSperζ regulates the structural continuity of sperm Ca2+ signaling domains and is required for normal fertility

scientific article

Characterization and development of photoactivatable fluorescent proteins for single-molecule-based superresolution imaging

scientific article

Characterization of the early events in dengue virus cell entry by biochemical assays and single-virus tracking

scientific article

Chromatin topology is coupled to Polycomb group protein subnuclear organization

scientific article

Chromosome organization by a nucleoid-associated protein in live bacteria

scientific article

Clathrin and AP2 are required for PtdIns(4,5)P2-mediated formation of LRP6 signalosomes ⬇️

scientific article published on February 11, 2013

Conservation and divergence of cortical cell organization in human and mouse revealed by MERFISH

scientific article published in July 2022

Correlating structural dynamics and function in single ribozyme molecules

scientific article

Correlative stochastic optical reconstruction microscopy and electron microscopy

scientific article

Coupled, circumferential motions of the cell wall synthesis machinery and MreB filaments in B. subtilis

scientific article

Coupling between clathrin-dependent endocytic budding and F-BAR-dependent tubulation in a cell-free system

scientific article

Decoding molecular and cellular heterogeneity of mouse nucleus accumbens

scientific article published on 18 October 2021

Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram

scientific article published on 28 October 2021

Developmental mechanism of the periodic membrane skeleton in axons

scientific article

Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling

scientific article published on 12 April 2019

Dissecting the Role of COPI Complexes in Influenza Virus Infection ⬇️

scientific article published on December 19, 2012

Dissecting the cell entry pathway of dengue virus by single-particle tracking in living cells ⬇️

scientific article (publication date: December 2008)

Dissecting the multistep reaction pathway of an RNA enzyme by single-molecule kinetic "fingerprinting".

scholarly article

Dual function of CD81 in influenza virus uncoating and budding

scientific article

Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton.

scientific article published on 8 January 2012

Electrical detection of single viruses

scientific article

Endocytosis of influenza viruses

scientific article published in August 2004

Epsin 1 is a cargo-specific adaptor for the clathrin-mediated endocytosis of the influenza virus

scientific article

Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging

scientific article

Exploration of the transition state for tertiary structure formation between an RNA helix and a large structured RNA.

scientific article published in May 2003

Exploring the folding landscape of a structured RNA

scientific article

Fast compressed sensing analysis for super-resolution imaging using L1-homotopy.

scientific article

Fast, three-dimensional super-resolution imaging of live cells

scientific article

High resolution optical microscopy analysis of Influenza Virus A assembly

High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing

scientific article

High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization

scientific article (publication date: 27 September 2016)

High-throughput, image-based screening of pooled genetic-variant libraries

scientific article published on 30 October 2017

Imaging poliovirus entry in live cells

scientific article published in July 2007

Imaging-based pooled CRISPR screening reveals regulators of lncRNA localization.

scientific article

Internalization and trafficking of cell surface proteoglycans and proteoglycan-binding ligands

scientific article published on April 2007

Isotropic 3D Super-resolution Imaging with a Self-bending Point Spread Function

scientific article

Lamina-Dependent Stretching and Unconventional Chromosome Compartments in Early C. elegans Embryos

scientific article published on 26 February 2020

Ligands for clathrin-mediated endocytosis are differentially sorted into distinct populations of early endosomes

scientific article

Live cell imaging of viral entry

scientific article published on 7 February 2013

Mapping Neuronal Connectivity Using Stochastic Optical Reconstruction Microscopy (Storm): The Brainstorm Project

article by Melike Lakadamyali et al published January 2010 in Biophysical Journal

Mapping Synaptic Input Fields of Neurons with Super-Resolution Imaging

scientific article

Membrane-associated periodic skeleton is a signaling platform for RTK transactivation in neurons

scientific article published on 01 August 2019

Microtubule-directed transport of purine metabolons drives their cytosolic transit to mitochondria

scientific article published on 03 December 2018

Molecular architecture and assembly principles of Vibrio cholerae biofilms

scientific article

Molecular, spatial and functional single-cell profiling of the hypothalamic preoptic region

scientific article published in Science

Multicolor super-resolution fluorescence imaging via multi-parameter fluorophore detection

scientific article

Multicolor super-resolution imaging with photo-switchable fluorescent probes

scientific article

Multiplexed detection of RNA using MERFISH and branched DNA amplification.

scientific article published on 22 May 2019

Multiplexed imaging of high-density libraries of RNAs with MERFISH and expansion microscopy.

scientific article

Nano-imaging with STORM

scientific article

New fluorescent probes for super-resolution imaging ⬇️

scientific article published on October 13, 2011

Phosphine Quenching of Cyanine Dyes as a Versatile Tool for Fluorescence Microscopy ⬇️

scientific article published on January 17, 2013

Photoswitching mechanism of cyanine dyes

scientific article

Postsynaptic actin regulates active zone spacing and glutamate receptor apposition at the Drosophila neuromuscular junction.

scientific article

Preparation of photoswitchable labeled antibodies for STORM imaging

scientific article

Prevalent presence of periodic actin-spectrin-based membrane skeleton in a broad range of neuronal cell types and animal species

scientific article published on 09 May 2016

Proteomic and functional analyses of the periodic membrane skeleton in neurons

scientific article published on 09 June 2022

RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells

scientific article

Rapid actin-dependent viral motility in live cells

scientific article published in September 2009

Real-Time Imaging of Translation on Single mRNA Transcripts in Live Cells

scientific article published on May 2016

Short-Range Spectroscopic Ruler Based on a Single-Molecule Optical Switch

scientific article (publication date: 15 March 2005)

Single-molecule enzymology of RNA: essential functional groups impact catalysis from a distance

scholarly article

Single-molecule transition-state analysis of RNA folding

scientific article

Single-particle virus tracking

scientific article

Single-virus tracking in live cells

scientific article

Slide into action: dynamic shuttling of HIV reverse transcriptase on nucleic acid substrates

scientific article

Spatial organization shapes the turnover of a bacterial transcriptome

scientific article published on 20 May 2016

Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression

scientific article published on 09 September 2019

Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH

scientific article

Statistical deconvolution for superresolution fluorescence microscopy.

scientific article

Stochastic optical reconstruction microscopy (STORM): a method for superresolution fluorescence imaging

scientific article

Structural maturation of cortical perineuronal nets and their perforating synapses revealed by superresolution imaging

scientific article published on 19 March 2019

Structural organization of the actin-spectrin-based membrane skeleton in dendrites and soma of neurons.

scientific article published on 24 July 2017

Structural plasticity of actin-spectrin membrane skeleton and functional role of actin and spectrin in axon degeneration

scientific article published on 01 May 2019

Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)

scientific article (publication date: October 2006)

Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells

scientific article

Super-resolution fluorescence imaging of organelles in live cells with photoswitchable membrane probes ⬇️

scientific article published on August 13, 2012

Super-resolution fluorescence microscopy

scientific article

Super-resolution microscopy by nanoscale localization of photo-switchable fluorescent probes

scientific article published on October 2008

Superresolution imaging of chemical synapses in the brain

scientific article

The 2015 super-resolution microscopy roadmap

The Human Cell Atlas White Paper ⬇️

journal article from 'arXiv:1810.05192 [q-bio]' published in 2018

Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy

scientific article

Transfection of genetically encoded photoswitchable probes for STORM imaging

scientific article published on June 2013

Two distinct binding modes of a protein cofactor with its target RNA.

scientific article published on 07 July 2006

Ultrabright photoactivatable fluorophores created by reductive caging

scientific article

Using single-particle tracking to study nuclear trafficking of viral genes

scientific article

Visualizing and discovering cellular structures with super-resolution microscopy

scientific article

Visualizing infection of individual influenza viruses

scientific article

Whole-cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution

scientific article

m6A-binding YTHDF proteins promote stress granule formation

scientific article published on 25 May 2020

βII-spectrin promotes mouse brain connectivity through stabilizing axonal plasma membranes and enabling axonal organelle transport

scientific article published on 17 June 2019

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