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List of works by Rune Matthiesen

Adaptive evolution and divergence of SERPINB3: a young duplicate in great Apes

scientific article

Algorithms and methods for correlating experimental results with annotation databases.

scientific article published on January 2010

Algorithms for Database-Dependent Search of MS/MS Data ⬇️

scientific article published on January 1, 2013

An Enzymatic Deglycosylation Scheme Enabling Identification of Core FucosylatedN-Glycans and O-Glycosylation Site Mapping of Human Plasma Proteins

scientific article published on 18 July 2007

Analysis of carbohydrates by mass spectrometry

scientific article published on 01 January 2007

Analysis of mass spectrometry data in proteomics.

scientific article

Bottom up proteomics data analysis strategies to explore protein modifications and genomic variants.

scientific article

Celecoxib inhibits interleukin-12 alphabeta and beta2 folding and secretion by a novel COX2-independent mechanism involving chaperones of the endoplasmic reticulum.

scientific article published on 7 February 2006

Characterization and comprehensive proteome profiling of exosomes secreted by hepatocytes

scientific article published on December 2008

Comparative analyses of the Conserved Oligomeric Golgi (COG) complex in vertebrates

scientific article

Comparing Peptide Spectra Matches Across Search Engines

scientific article published on 01 January 2020

Comprehensive comparison of collision induced dissociation and electron transfer dissociation.

scientific article

Computational approach for identification and characterization of GPI-anchored peptides in proteomics experiments

scientific article published on 01 June 2007

Computational methods for analysis of two-dimensional gels

scientific article published in January 2010

ContDist: a tool for the analysis of quantitative gene and promoter properties

scientific article

Data Imputation in Merged Isobaric Labeling-Based Relative Quantification Datasets

scientific article published on 01 January 2020

Database-independent, database-dependent, and extended interpretation of peptide mass spectra in VEMS V2.0.

scientific article published in September 2004

Deep Sequencing Analysis Reveals Distinctive Non-Coding RNAs When Comparing Tumor Multidrug-Resistant Cells and Extracellular Vesicles with Drug-Sensitive Counterparts

scientific article published on 14 January 2020

Differential expression of alpha-2,3-sialyltransferases and alpha-1,3/4-fucosyltransferases regulates the levels of sialyl Lewis a and sialyl Lewis x in gastrointestinal carcinoma cells.

scientific article published on 23 September 2009

Differential fragmentation patterns of pectin oligogalacturonides observed by nanoelectrospray quadrupole ion-trap mass spectrometry using automated spectra interpretation

scientific article published in April 2007

Discussion on common data analysis strategies used in MS-based proteomics.

scientific article

Down-regulation of the strawberry Bet v 1-homologous allergen in concert with the flavonoid biosynthesis pathway in colorless strawberry mutant

scientific article

Efficient transesterification of sucrose catalysed by the metalloprotease thermolysin in dimethylsulfoxide.

scientific article published in May 2002

Erratum to: Methylation of the miR-126 gene associated with glioma progression.

scientific article

Evening and morning alterations in Obstructive Sleep Apnea red blood cell proteome

scientific article (publication date: April 2017)

Extra-cellular vesicles carry proteome of cancer hallmarks

scientific article published on 01 January 2020

Extracting monoisotopic single-charge peaks from liquid chromatography-electrospray ionization-mass spectrometry

scientific article published in January 2007

Folding Status Is Determinant over Traffic-Competence in Defining CFTR Interactors in the Endoplasmic Reticulum.

scientific article published on 14 April 2019

Functional blockade of α5β1 integrin induces scattering and genomic landscape remodeling of hepatic progenitor cells.

scientific article

Gains, losses and changes of function after gene duplication: study of the metallothionein family

scientific article

Global mass spectrometry and transcriptomics array based drug profiling provides novel insight into glucosamine induced endoplasmic reticulum stress

scientific article

Glycation modulates glutamatergic signaling and exacerbates Parkinson’s disease-like phenotypes

scientific article published in 2022

Human spermatogenic failure purges deleterious mutation load from the autosomes and both sex chromosomes, including the gene DMRT1.

scientific article

Identification of RNA molecules by specific enzyme digestion and mass spectrometry: software for and implementation of RNA mass mapping

scientific article

Identification of salt-tolerant Sinorhizobium sp. strain BL3 membrane proteins based on proteomics

scientific article

Identification of species by multiplex analysis of variable-length sequences

scientific article (publication date: 4 October 2010)

IgG+ Extracellular Vesicles Measure Therapeutic Response in Advanced Pancreatic Cancer

scientific article published in 2022

Influence of Aldehyde Dehydrogenase Inhibition on Stemness of Endometrial Cancer Stem Cells

scientific article published in 2024

Integration of gel-based proteome data with pProRep.

scientific article

Integrative analysis of the ubiquitin proteome isolated using Tandem Ubiquitin Binding Entities (TUBEs)

article

Integrative genomic signatures of hepatocellular carcinoma derived from nonalcoholic Fatty liver disease.

scientific article published on 20 May 2015

Interpretation of Tandem Mass Spectra of Posttranslationally Modified Peptides

scientific article published on 01 January 2020

Interpretation of collision-induced fragmentation tandem mass spectra of posttranslationally modified peptides

scientific article published in January 2007

Interpretation of tandem mass spectra of posttranslationally modified peptides

scientific article published in January 2013

Interpreting peptide mass spectra by VEMS.

scientific article published in April 2003

Introduction to Mass Spectrometry-Based Proteomics

scientific article published on 01 January 2020

Introduction to omics.

scientific article

Introduction to proteomics

scientific article

Is the Proteome of Bronchoalveolar Lavage Extracellular Vesicles a Marker of Advanced Lung Cancer?

scientific article published on 20 November 2020

LAMP2A regulates the loading of proteins into exosomes

scientific article published on 25 March 2022

LC-MS Spectra Processing

scientific article published on 01 January 2020

LC-MS spectra processing.

scientific article published in January 2013

Loss of the glycine N-methyltransferase gene leads to steatosis and hepatocellular carcinoma in mice

scientific article published on April 2008

MS-Based Biomarker Discovery in Bronchoalveolar Lavage Fluid for Lung Cancer

scientific article published on 12 November 2019

Methods and Algorithms for Quantitative Proteomics by Mass Spectrometry

scientific article published on 01 January 2020

Methods and algorithms for quantitative proteomics by mass spectrometry

scientific article

Methods and algorithms for relative quantitative proteomics by mass spectrometry

scientific article published on January 2010

Methylation of the miR-126 gene associated with glioma progression

scientific article published on 13 October 2015

New insights into functional regulation in MS-based drug profiling.

scientific article

New insights into host-parasite ubiquitin proteome dynamics in P. falciparum infected red blood cells using a TUBEs-MS approach

scientific article published on 10 March 2016

Organization of proteomics data with YassDB.

scientific article

Overview of proteomics studies in obstructive sleep apnea

scientific article

Overview on techniques in cluster analysis.

scientific article published on January 2010

PAnalyzer: a software tool for protein inference in shotgun proteomics.

scientific article

Profiling of lung microbiota discloses differences in adenocarcinoma and squamous cell carcinoma

scientific article published on 06 September 2019

Proteomic Profiling of Plasma- and Gut-Derived Extracellular Vesicles in Obesity

scientific article published in 2024

Proteomics facing the combinatorial problem

scientific article published in January 2010

Quantitation of Multisite EGF Receptor Phosphorylation Using Mass Spectrometry and a Novel Normalization Approach

Quantitation with virtual expert mass spectrometrist

scientific article published on 01 January 2007

Quantitative proteome analysis of an antibiotic resistant Escherichia coli exposed to tetracycline reveals multiple affected metabolic and peptidoglycan processes

scientific article

Quantitative proteomic analysis of post-translational modifications of human histones

scientific article (publication date: July 2006)

Quantitative proteomics identifies Gemin5, a scaffolding protein involved in ribonucleoprotein assembly, as a novel partner for eukaryotic initiation factor 4E

scientific article

Red Blood Cells in Clinical Proteomics.

scientific article published on January 2017

SIR: Deterministic protein inference from peptides assigned to MS data.

scientific article

SNP-PHAGE: high-throughput SNP discovery pipeline.

scientific article published in January 2010

Sequence handling by sequence analysis toolbox v1.0.

scientific article published in January 2007

Shotgun mass spectrometry-based lipid profiling identifies and distinguishes between chronic inflammatory diseases

scientific article published on 24 July 2021

Solution to Dark Matter Identified by Mass-Tolerant Database Search

scientific article published on 01 January 2020

Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry

scientific article published on 8 August 2005

Strategies to Identify Recognition Signals and Targets of SUMOylation.

scientific article

The Antitumor Activity of a Lead Thioxanthone is Associated with Alterations in Cholesterol Localization

scientific article published on 12 December 2018

Tools for Protein Posttranslational Modifications Analysis: FAK, a Case Study ⬇️

scientific article published on January 1, 2013

Useful mass spectrometry programs freely available on the internet

scientific article published on 01 January 2007

VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.

scientific article

Virtual Expert Mass Spectrometrist v3.0: an integrated tool for proteome analysis

scientific article published on 01 January 2007

Virtual expert mass spectrometrist: iTRAQ tool for database-dependent search, quantitation and result storage.

scientific article

WNK1 phosphorylation sites in TBC1D1 and TBC1D4 modulate cell surface expression of GLUT1

scientific article published on 06 December 2019

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