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List of works by Laurent Duret

, a long non-coding transcript coating the active X chromosome in human pluripotent cells

A Medicago truncatula homoglutathione synthetase is derived from glutathione synthetase by gene duplication

scientific article

A new perspective on isochore evolution.

scientific article published on 5 August 2006

Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline

scientific article published on 6 February 2008

BTG1, a member of a new family of antiproliferative genes ⬇️

scientific article published on April 1, 1992

Bedrock radioactivity influences the rate and spectrum of mutation

scientific article published on 30 November 2020

Bioinformatics with a French accent

scientific article

Chromosomal distribution and coding capacity of the human endogenous retrovirus HERV-W family

scientific article (publication date: 20 May 2000)

Cloning and characterization of a gene encoding a novel immunodominant antigen of Trypanosoma cruzi.

scientific article published on August 1997

Comment on "Human-specific gain of function in a developmental enhancer".

scientific article published in February 2009

Comparative population genomics in animals uncovers the determinants of genetic diversity.

scientific article

Correction: The Relationship among Gene Expression, the Evolution of Gene Dosage, and the Rate of Protein Evolution.

scientific article

DNA microinjection into the macronucleus of paramecium

scientific article published in January 2010

Detecting genomic features under weak selective pressure: the example of codon usage in animals and plants.

scientific article published in January 2002

Detecting positive selection within genomes: the problem of biased gene conversion

scientific article

Determinants of CpG islands: expression in early embryo and isochore structure

scientific article

Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate

scientific article published on 01 January 2000

Differential retention of metabolic genes following whole-genome duplication

scientific article published on 13 February 2009

Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes ⬇️

scientific article published on 24 April 2001

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

scientific article

Estimation of the RNU2 macrosatellite mutation rate by BRCA1 mutation tracing

scientific article

Evidence for widespread GC-biased gene conversion in eukaryotes.

scientific article

Evidence that functional transcription units cover at least half of the human genome

scientific article published in May 2004

Evolution of synonymous codon usage in metazoans

scientific article (publication date: December 2002)

Evolutionary Origin and Maintenance of Coexpressed Gene Clusters in Mammals

scientific article published on 6 June 2006

Evolutionary affinities of the order Perissodactyla and the phylogenetic status of the superordinal taxa Ungulata and Altungulata.

scientific article

Expected relationship between the silent substitution rate and the GC content: implications for the evolution of isochores.

scientific article published in January 2002

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

scientific article

GC content evolution of the human and mouse genomes: insights from the study of processed pseudogenes in regions of different recombination rates

scientific article published on 28 April 2006

GC-Content Evolution in Mammalian Genomes: The Biased Gene Conversion Hypothesis ⬇️

scientific article published on October 1, 2001

GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates

scientific article

Genome-scale coestimation of species and gene trees.

scientific article published on 6 November 2012

Genome-wide studies highlight indirect links between human replication origins and gene regulation.

scholarly article

Global survey of mobile DNA horizontal transfer in arthropods reveals Lepidoptera as a prime hotspot

scientific article published on 01 February 2019

Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

scientific article

HOBACGEN: database system for comparative genomics in bacteria

scientific article

HOPPSIGEN: a database of human and mouse processed pseudogenes

scientific article (published 2005-01-01)

How consistent is RAD-seq divergence with DNA-barcode based clustering in insects?

scientific article published on 27 April 2020

ISG20L2, a novel vertebrate nucleolar exoribonuclease involved in ribosome biogenesis

scientific journal article

Identification and characterization of human Mex-3 proteins, a novel family of evolutionarily conserved RNA-binding proteins differentially localized to processing bodies

scientific article

Immunocytochemistry of Paramecium cytoskeletal structures

scientific article published on 01 January 2010

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes

scientific article

Integrated databanks access and sequence/structure analysis services at the PBIL.

scientific article

Is RAD‐seq suitable for phylogenetic inference? An in silico assessment and optimization ⬇️

scientific article published on February 27, 2013

Isolation and characterization of a cDNA encoding a chicken actin-like protein.

scientific article published on March 1995

LALNVIEW: a graphical viewer for pairwise sequence alignments.

scientific article published in December 1996

Maintaining clonal Paramecium tetraurelia cell lines of controlled age through daily reisolation.

scientific article

Mass culture of Paramecium tetraurelia

scientific article published on 01 January 2010

Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes

scientific article published on 29 July 2021

Meiotic recombination favors the spreading of deleterious mutations in human populations

scientific article

Molecular characterization and placental expression of HERV-W, a new human endogenous retrovirus family.

scientific article

Monoallelic expression and tissue specificity are associated with high crossover rates

scientific article published on 21 October 2009

Mutation patterns in the human genome: more variable than expected

scientific article

Natural history of the ERVWE1 endogenous retroviral locus.

scientific article

Neutral effect of recombination on base composition in Drosophila

scientific article published on 01 April 2003

New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling.

scientific article published in April 1998

No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans

scientific article published on 9 November 2005

Paramecium tetraurelia: the renaissance of an early unicellular model

scientific article published on 01 January 2010

Patterns of selection against transposons inferred from the distribution of Tc1, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans

scientific article (publication date: November 2003)

Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes

scientific article published on 18 June 2008

Physical and transcript map of the autosomal dominant colobomatous microphthalmia locus on chromosome 15q12-q15 and refinement to a 4.4 Mb region

scientific article

Placenta-specific INSL4 expression is mediated by a human endogenous retrovirus element.

scientific article

Polymorphix: a sequence polymorphism database

scientific article

Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest

scientific article published on 06 November 2019

Preventing dangerous nonsense: selection for robustness to transcriptional error in human genes

scientific article

ROSO: optimizing oligonucleotide probes for microarrays

scientific article published on 01 January 2004

Rearrangement of CCND1 (BCL1/PRAD1) 3' untranslated region in mantle-cell lymphomas and t(11q13)-associated leukemias.

scientific article published in June 1994

Recombination drives the evolution of GC-content in the human genome.

scientific article published on 12 February 2004

Recombination, meiotic expression and human codon usage.

scientific article published on 15 August 2017

Regulation of dauer larva development in Caenorhabditis elegans by daf-18, a homologue of the tumour suppressor PTEN

scientific article published on 01 March 1999

Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance

scientific article published on 8 December 2004

Searching for regulatory elements in human noncoding sequences.

scientific article published on June 1997

Silencing specific Paramecium tetraurelia genes by feeding double-stranded RNA

scientific article published on 01 January 2010

Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores.

scientific article

Strong heterogeneity in mutation rate causes misleading hallmarks of natural selection on indel mutations in the human genome

scientific article published on 09 October 2013

Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form.

scientific article published in July 2003

Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans.

scientific article

The GC content of primates and rodents genomes is not at equilibrium: a reply to Antezana

scientific article published on 11 May 2006

The Paramecium germline genome provides a niche for intragenic parasitic DNA: evolutionary dynamics of internal eliminated sequences

scientific article

The covariation between TpA deficiency, CpG deficiency, and G+C content of human isochores is due to a mathematical artifact

scientific article published in November 2000

The fitness cost of mis-splicing is the main determinant of alternative splicing patterns

scientific article published on 30 October 2017

The impact of recombination on nucleotide substitutions in the human genome

scientific article

The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes

scientific article published on 11 March 2013

The red queen model of recombination hotspots evolution in the light of archaic and modern human genomes

scientific article

The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells

scientific article

Translational control of intron splicing in eukaryotes

scientific article published in Nature

Transposons but not retrotransposons are located preferentially in regions of high recombination rate in Caenorhabditis elegans

scientific article

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases

scientific article

Ultra-fast sequence clustering from similarity networks with SiLiX ⬇️

scientific article published on April 22, 2011

Unexpected observations after mapping LongSAGE tags to the human genome

scientific article

Use of a TT virus ORF1 recombinant protein to detect anti-TT virus antibodies in human sera.

scientific article published on December 2000

Vanishing GC-rich isochores in mammalian genomes.

scientific article

Why do genes have introns? Recombination might add a new piece to the puzzle

scientific article published in April 2001

XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells.

scientific article

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